PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf20519g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TALE

Protein Properties

Length: 383aa MW: 42805.9 Da PI: 7.906

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf20519g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	109	146	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Peinf101Scf20519g00003.1 109 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 146 564459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	2.0E-15	1	40	IPR006563	POX domain
PROSITE profile	PS50071	12.05	87	150	IPR001356	Homeobox domain
CDD	cd00086	3.15E-12	90	151	No hit	No description
SMART	SM00389	4.2E-10	90	154	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-17	91	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-29	93	156	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-18	107	146	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MQIIVSSFEQ VAGIGSAKSY TQLALHAISK QFRCLKDAIV GQIKATSKNL GEEEGLLGGK 60 IEGSRLKFVD HHLRQQRALQ QLGMMQPNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS 120 DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEV KNNQDSNSSQ ENKNHTDHHK 180 SNKEILVSKS CAPQETNKPS TPTEISTSTA ISTSPNDGST FQAQAAAGFS FNIGSLNMEN 240 TAHDDQEHNV KKPRNHHDMQ INSPSSILSV DHHMETKAKG FNPLMAAYTM GEFGRFNPHD 300 QQMATNFHAN GVSLTLGLPP SENLALQGSQ QNYLSNQNID LGNSNYSRMG NPQANSHPNI 360 SYEDIDFQSG KRFPTQLLPD FVA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MQIIVSSFEQ VAGIGSAKSY TQLALHAISK QFRCLKDAIV GQIKATSKNL GEEEGLLGGK  60
IEGSRLKFVD HHLRQQRALQ QLGMMQPNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS  120
DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEV KNNQDSNSSQ ENKNHTDHHK  180
SNKEILVSKS CAPQETNKPS TPTEISTSTA ISTSPNDGST FQAQAAAGFS FNIGSLNMEN  240
TAHDDQEHNV KKPRNHHDMQ INSPSSILSV DHHMETKAKG FNPLMAAYTM GEFGRFNPHD  300
QQMATNFHAN GVSLTLGLPP SENLALQGSQ QNYLSNQNID LGNSNYSRMG NPQANSHPNI  360
SYEDIDFQSG KRFPTQLLPD FVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	96	154	5	63	Homeobox protein Meis2
3k2a_B	3e-16	96	154	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406697	1e-152	AF406697.1 Solanum tuberosum BEL1-related homeotic protein 5 (Bel5) mRNA, complete cds.
GenBank	EU686384	1e-152	EU686384.1 Solanum etuberosum BEL5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629592.1	1e-179	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	4e-91	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3X9F7	1e-177	A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1
TrEMBL	A0A1S4BU02	1e-177	A0A1S4BU02_TOBAC; BEL1-like homeodomain protein 1
TrEMBL	A0A1U7WGY1	1e-177	A0A1U7WGY1_NICSY; BEL1-like homeodomain protein 1
STRING	XP_009629592.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-73	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]