PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000081
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21486.6 Da    PI: 5.2048
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40946651PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55335422PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55337281PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-1731PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-1732PU_refplantGDBView CDS
PUT-175a-Picea_glauca-1733PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-46157PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rq tfskRr g++KKAeELS+LC+a+va+++fsstgkly yss
  Pgl000081  9 KRIANASARQMTFSKRRRGLFKKAEELSILCAADVALVVFSSTGKLYNYSS 59
               79***********************************************96 PP
2K-box27.61.2e-10851731599
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn........ellleqieelqkkekelqeenkaLrkkle 99 
                e  +q+ +++k++ e   + +     e+Le L+lk+L++Le+q e  l+ iRs+K+        e+l ++i+elq+k  ++ een++Lr +l+
  Pgl000081  85 EFESQDPKRIKQQFEDASQDL----REELEGLTLKDLEKLEEQFEMELSCIRSQKMsflwcckvEHLSKKINELQQKVIQMIEENTKLRGQLN 173
                666777788888888777774....49***************************974444444467899*******************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.441161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002654.40E-35269No hitNo description
SuperFamilySSF554555.89E-29374IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.02469178IPR002487Transcription factor, K-box
PfamPF014862.9E-1082172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAREKIEMKR IANASARQMT FSKRRRGLFK KAEELSILCA ADVALVVFSS TGKLYNYSSS  60
SMEVILDKYV LYPSTIQKDG QQILEFESQD PKRIKQQFED ASQDLREELE GLTLKDLEKL  120
EEQFEMELSC IRSQKMSFLW CCKVEHLSKK INELQQKVIQ MIEENTKLRG QLNEGDGSLV  180
ENNDGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19172172MEF2C
5f28_B4e-19172172MEF2C
5f28_C4e-19172172MEF2C
5f28_D4e-19172172MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.275540.0somatic embryo| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.18e-47MADS-box protein JOINTLESS isoform X1
RefseqXP_010926366.18e-47MADS-box protein JOINTLESS isoform X1
RefseqXP_019707170.18e-47MADS-box protein JOINTLESS isoform X1
RefseqXP_019707171.17e-47MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY64e-44JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA9NR511e-105A9NR51_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t016e-45(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-44MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]