PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000130
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 473aa    MW: 52156.7 Da    PI: 5.3999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345145PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32591PU_refplantGDBView CDS
PUT-175a-Picea_glauca-32592PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1974122355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAaka++a +kk++g
  Pgl000130  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDAEAKKIRG 122
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3173131IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2173131IPR016177DNA-binding domain
SMARTSM003801.9E-3673136IPR001471AP2/ERF domain
PROSITE profilePS5103223.39373130IPR001471AP2/ERF domain
PRINTSPR003672.8E-117485IPR001471AP2/ERF domain
PfamPF008471.8E-1274122IPR001471AP2/ERF domain
CDDcd000187.37E-3374132No hitNo description
PRINTSPR003672.8E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEXVSESFN KSGSFDEGFV DFDEGYKQKI KPSKNIFNSK QKFSSGDENE AIPPLKDFQK  60
SAAKSARRKR TNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA KAYDAEAKKI  120
RGKKAKLNFA DDSCSVKIDS SKKMPKKKVK LCTKNPDLLL SSNINSKVKS SNSPKPDLLE  180
GYYINTQMEP SLKDVCRSDL PIYDYNDMEY GDSQFIKPSA PFRSNSNAST VQSSEHSNLS  240
QTLQKSCPCE ICSHNYSEVS NFTSTLCGHA ASFEPVKSSH PGGYFDSDHS SISFDRAHFP  300
WAHETKTPEI SSVYDDRNES VFVDIKPPVD GGVKDRPVDT SINVDGGTGS FVVDTSIEVN  360
DGTECFVMDT PVEVKGGTEC YKTEDNIGQL EFSKELSALE SYLGLSESPN LKATIDGSIE  420
VAGHAAGSFP DDECSLKPWI YDDLPISGSV YQSSLGYLPI SGSVYQNSLG SCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2174129359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.52910.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-26ethylene-responsive element binding protein