PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000471
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 502aa    MW: 57351.1 Da    PI: 8.6525
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337432PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-42166PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.42.1e-09124190267
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikeg 67 
                W++  + +L+   ++m  +++rg+l k++W ++++++ +    + s +qCk kw+ l+k y k k +
  Pgl000471 124 WPNTAIDVLLLKFEDMCFNVSRGRLGKTHWGQIADAVNAVYSaNYSGVQCKYKWNRLKKSYNKAKLH 190
                9************************************88766377*****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-9124204No hitNo description
SuperFamilySSF527991.92E-33352495IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019114.6E-24352369IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene3DG3DSA:3.90.190.101.0E-29352495IPR029021Protein-tyrosine phosphatase-like
PfamPF031624.9E-55353500IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019114.6E-24389402IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.6E-24408422IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.6E-24425439IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGDSVKTPQL LEEPSTTTSP HHQQHNNKKG STSSIVEPES MSLTHYNLNT VQQSPRASSS  60
QYHHQQHHFR SKQESIACIR SVLQNFMASP SIQSQNPIDN RPPLSLKRKE MTESPSRAQK  120
EALWPNTAID VLLLKFEDMC FNVSRGRLGK THWGQIADAV NAVYSANYSG VQCKYKWNRL  180
KKSYNKAKLH GETSRFLFYK RVERIVHRAS GQKLHEEEEE EEEEEEEMAS EDDDVDSICE  240
AASIESKPSS ASMSATEDDD VHRRPKKRGV TLKSFGYKME QSMNNLTQSM KSIEKTRTDK  300
MKKLLDTQLE ITSILVQNNK MLKRSDGVAA GRSRAMNEAE LICRQQGGIA SFVPPLNFAM  360
VDKGVYRSGF PNHANFPFLK TLKLRSIIYL CPEPYPGVNM EFLRAEEIRF FHFGIKEYKE  420
PIMGISEDDV RDALKILLDI RNHPVLIHCR TGKRPTSCLV GCLRKIQNWC LASVFDEYQR  480
FAGTKTQVSD LQFIERINIP NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A4e-653534993149At1g05000
1xri_B4e-653534993149At1g05000
2q47_A4e-653534993149Probable tyrosine-protein phosphatase At1g05000
2q47_B4e-653534993149Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.145380.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AEE50.0D5AEE5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-07sequence-specific DNA binding transcription factors