PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl000522

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 464aa MW: 52087.3 Da PI: 6.249

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55350035	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-43175	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.8e-34	116	170	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Pgl000522 116 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLQKYRL 170 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.86	113	173	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-33	113	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.2E-17	115	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	116	171	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-9	118	169	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-27	212	258	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MGFTEDNXLI DNHLSLPSFG QTGTKNPLPR PFYIEHQVGF SRKALYYFYW LPEAGSSAAR 60 RARKAAIEAY NRMYQVNNSS MSSLEKPPSF EETQSGPLEG TNLPGDACLV LTTDPKPRLR 120 WTTELHERFV DAVTQLGGPD KATPKTIMRA MGVKGLTLYH LKSHLQKYRL GKQPFKEFSD 180 QSNKDASCLT EGQGASTCSS SKMINQDVNE SFQITEALRV QMEVQRRLHE QLEVQRHLQL 240 RIEAQGKYLQ SILEKACQAL TDQTIASAGL EAARQELSEL AMKVSNGCLS SPFEDVNLPS 300 LPEIPQIHVD ESTLHQQTQL TDCSVDSCLT SNESTPKIPQ EDMQAVRNKR SRPLYCDNDA 360 LVWDNDVRND LRLQELSAAC LSQVGNLNEE EQMPSVSPIE SHSERNSMKD EFDTRMTKTK 420 DGIGNPAERE LQSSPKLERP AARRATHLVH DRISSQVKGG PFFL

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MGFTEDNXLI DNHLSLPSFG QTGTKNPLPR PFYIEHQVGF SRKALYYFYW LPEAGSSAAR  60
RARKAAIEAY NRMYQVNNSS MSSLEKPPSF EETQSGPLEG TNLPGDACLV LTTDPKPRLR  120
WTTELHERFV DAVTQLGGPD KATPKTIMRA MGVKGLTLYH LKSHLQKYRL GKQPFKEFSD  180
QSNKDASCLT EGQGASTCSS SKMINQDVNE SFQITEALRV QMEVQRRLHE QLEVQRHLQL  240
RIEAQGKYLQ SILEKACQAL TDQTIASAGL EAARQELSEL AMKVSNGCLS SPFEDVNLPS  300
LPEIPQIHVD ESTLHQQTQL TDCSVDSCLT SNESTPKIPQ EDMQAVRNKR SRPLYCDNDA  360
LVWDNDVRND LRLQELSAAC LSQVGNLNEE EQMPSVSPIE SHSERNSMKD EFDTRMTKTK  420
DGIGNPAERE LQSSPKLERP AARRATHLVH DRISSQVKGG PFFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-19	116	172	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	116	172	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	116	172	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	116	172	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-19	116	172	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.2675	0.0	needle\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006840145.1	1e-140	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-107	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	C0PPV3	0.0	C0PPV3_PICSI; Uncharacterized protein
STRING	ERN01820	1e-139	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-110	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]