PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl000528

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GeBP

Protein Properties

Length: 460aa MW: 52125.4 Da PI: 6.0063

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55338714	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-2549269	PU_ref	plantGDB	View CDS
PUT-175a-Picea_glauca-2549270	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.3	2.7e-10	127	218	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgke.psfskehdqkifelskkiWg 97 + ws eDei+l +++ a g + +++afye +k+ ++++ s+ q+ eK+rr++ +f + +++ ak ++ + ++ h+ + +++ k+iWg Pgl000528 127 KKWSAEDEISLANAVLASSA--G--GQVNMTAFYERAKETLQSE-SHGQIYEKMRRMRSRFWTIESQlrdAKIAEDfFPYRSMHEADLYKVWKQIWG 218 67***********98744..3..3468*********98.789*********9998886554433441457899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.0E-13	127	218	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
XSSSDDGDAR SHAKPNSTPP TKSSAASSDS EPKTPRRSSV MKKSRDGSRP DTRVGPKQSR 60 DRLEAKLPAS KKKKNSRKTG VSGNKSQIDI EELLAQTYPK EPSVLGDETH ITNGLEMPSE 120 HAKDTAKKWS AEDEISLANA VLASSAGGQV NMTAFYERAK ETLQSESHGQ IYEKMRRMRS 180 RFWTIESQLR DAKIAEDFFP YRSMHEADLY KVWKQIWGRH ERRNEAAQDI EMEQNRELRS 240 RSHARQVHNG DVNEDRHESR TEAAHMNGEP RSHSHAMQRQ NGEVTDDPPE EEEEEEEEEH 300 QQAEEEENVV ETAGKTPSRV ACNHDEEFNL IQTEIKALVC KVKNNVQTML DDTEAKMEGL 360 IDSLFKRAVV AAQVQSLGSE VGIGSCLCSS LSRRMKELEC VRSVREFPGL NEAEAKILQQ 420 KWRKHQIEEL RTFSGRLELL QEECKLCIKD LETANSSHNS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

XSSSDDGDAR SHAKPNSTPP TKSSAASSDS EPKTPRRSSV MKKSRDGSRP DTRVGPKQSR  60
DRLEAKLPAS KKKKNSRKTG VSGNKSQIDI EELLAQTYPK EPSVLGDETH ITNGLEMPSE  120
HAKDTAKKWS AEDEISLANA VLASSAGGQV NMTAFYERAK ETLQSESHGQ IYEKMRRMRS  180
RFWTIESQLR DAKIAEDFFP YRSMHEADLY KVWKQIWGRH ERRNEAAQDI EMEQNRELRS  240
RSHARQVHNG DVNEDRHESR TEAAHMNGEP RSHSHAMQRQ NGEVTDDPPE EEEEEEEEEH  300
QQAEEEENVV ETAGKTPSRV ACNHDEEFNL IQTEIKALVC KVKNNVQTML DDTEAKMEGL  360
IDSLFKRAVV AAQVQSLGSE VGIGSCLCSS LSRRMKELEC VRSVREFPGL NEAEAKILQQ  420
KWRKHQIEEL RTFSGRLELL QEECKLCIKD LETANSSHNS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.1304	0.0	needle

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5A857	0.0	D5A857_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-06	DNA-binding storekeeper protein-related transcriptional regulator