PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000531
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 458aa    MW: 49962.3 Da    PI: 8.4639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349223PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19892PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.52.4e-122342760
               E-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY 27 CtsagCpvkkkversaedpkvveitYegeHnhek 60
               Ct+++C+vkkkvers   ++++ei+Y+g+Hnh+k
  Pgl000531  2 CTHPNCQVKKKVERSP-HGQITEIVYKGTHNHPK 34
               ****************.9**************85 PP
2WRKY107.85.4e-34198256159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Pgl000531 198 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 256
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.431135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-8235IPR003657WRKY domain
SMARTSM007743.4E-5234IPR003657WRKY domain
PfamPF031061.7E-7233IPR003657WRKY domain
SuperFamilySSF1182901.31E-7235IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-38183258IPR003657WRKY domain
SuperFamilySSF1182906.02E-30190258IPR003657WRKY domain
PROSITE profilePS5081139.054193258IPR003657WRKY domain
SMARTSM007744.1E-40198257IPR003657WRKY domain
PfamPF031068.9E-27199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
XCTHPNCQVK KKVERSPHGQ ITEIVYKGTH NHPKPQPSRR SAVGSAHMIH EGAESTEGPG  60
ATIKVEGGST WRNTEFGLLK DKDAAHCSKA WKNELLERSS SASGVTDLSD PSSTAQVQSS  120
SRLDSLGTPE LSSTLASDDD MEDGGTNDSK SLGDDGDENE SDSKRRKKEN NTVDIVAASR  180
AIREPRVVVQ TTSEIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNAGCP VRKHVERASH  240
DPKAVITTYE GKHNHDVPAA RNSSHDNAAK GNGAAPLAMQ TNGPAPMNTI PRSVPQVQDI  300
VSRPVPQVQG IVSRFDRHLD PRNEYGKRAY FEKVVDGNLR LQDKNAGSLD LKMGAGMGFG  360
MFGLGNSHTD KRQIAEGHPP FPMQIHGTTN HGLPGIELSG KPIVPIQPYF GQAKDNGMRF  420
LRPKEEQNDD SGFGNQLPFN PTNSTLYQQI MGRLSMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38189259878Probable WRKY transcription factor 4
2lex_A1e-38189259878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.45400.0needle| root| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875770.11e-127WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ61e-73WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLD5ABY60.0D5ABY6_PICSI; Uncharacterized protein
STRINGERN018681e-127(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.16e-74WRKY family protein