PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000558
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CO-like
Protein Properties Length: 444aa    MW: 49641.2 Da    PI: 4.9348
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40899970PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55338654PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-21055PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.3e-0881125341
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 ++C+ +e+ ++   C+ +   lC  C + +H+       H++ p
  Pgl000558  81 VWVCEVCEQAPAVVTCKADAAALCVACDTDIHSAnplasrHERAP 125
                689*****************************6678888888766 PP
2CCT68.51.8e-23377420144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pgl000558 377 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 420
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.143676IPR000315B-box-type zinc finger
CDDcd000212.41E-44083No hitNo description
PROSITE profilePS5011910.36779126IPR000315B-box-type zinc finger
SMARTSM003369.3E-1579126IPR000315B-box-type zinc finger
PfamPF006437.6E-780125IPR000315B-box-type zinc finger
CDDcd000217.28E-882126No hitNo description
PfamPF062032.1E-17377419IPR010402CCT domain
PROSITE profilePS5101716.797377419IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVKEEDKDWH TVEDLHRGSH VDHKEFLRGI GGWRMSMPKL CDVCQVTNSV LYCRAHTAQL  60
CLVCDVKIHG GSKASLCHER VWVCEVCEQA PAVVTCKADA AALCVACDTD IHSANPLASR  120
HERAPVIPFY ECPNMPNNNT ATNANNDNLD CNVLLNEDGG GDDPLKHDYV DDDYDDYDDD  180
ENDHNNLLNH QEDDNDAEIC CAEEAATASW LIPEANRNNL TNINGGNSEG EDKMVKDKLK  240
FKAYMQSIDF LQDVENYVDL EYLGTTTTIT TPTTPTAHMG ADSMVPVHTP EVIEHSSTKV  300
SIETARSLDV DAASKCNYVY RTTSLNHCVS SSSIDVGIVP DSNTTTDIST PYHDPRGVFE  360
IPPRVVHPGG HVEVMGREAR VLRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT  420
EVEVEQIYSS SLLPDQGYGV VPSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.29800.0needle| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB3VTV20.0B3VTV2_PICAB; Constans-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.14e-39CONSTANS-like 3