PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000562
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 443aa    MW: 48766.7 Da    PI: 4.8608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29738668PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55341914PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-6822PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19254304256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  Pgl000562 254 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDTAAYQLRGE 304
                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-32253313No hitNo description
Gene3DG3DSA:3.30.730.108.5E-32254312IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-23254312IPR016177DNA-binding domain
PROSITE profilePS5103223.248254311IPR001471AP2/ERF domain
SMARTSM003804.4E-35254317IPR001471AP2/ERF domain
PfamPF008479.5E-13255304IPR001471AP2/ERF domain
PRINTSPR003679.1E-11255266IPR001471AP2/ERF domain
PRINTSPR003679.1E-11277293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAGAIESEFP SHVPSINCGA FMADPVIYEE LMKAVEPYGV RNSKTELSDC ENLVGVSGSS  60
SCFLWPDQEQ MQMRVLGSNS VRNVTEMSAC AAPTISDSWS ELLMNGCSNS GDLTWYPSFH  120
GSEVNSHQQY AFVPDRPMDM GLQSMPSSQM GSSQEGMDSS QALSLSEIYE QIQANLQMQK  180
KQQMDQLQLQ LLLAKNQLPQ QVLGSSAYHY QQQQQLKQLR DLSLSRNLLG ARAQPMKLSA  240
RNDSKLGIAR AAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA AFAYDTAAYQ  300
LRGEYARLNF PDLRYLLLSN SDNGSPNVLS SPGNALSVLK SSVDAKLQAI CQRLSQENSS  360
ENRLMAQTAN NEALENVKCE VSGSSNSSTI CGAESASTSP SKCEVDSSAL QKAPSFSIFA  420
ELDDCLTKMP SLDPEVIQDV MSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20253311160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.112150.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.13e-50PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A0C9QV801e-128A0A0C9QV80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7287_2371 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.17e-32ERF family protein