PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000613
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 414aa    MW: 43157 Da    PI: 6.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351515PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-4149268PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12182227555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P++      K +Ka++L + +eY+k Lq
  Pgl000613 182 HSIAERLRRERIAERMKSLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 227
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17175236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.244177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12181231No hitNo description
PfamPF000103.4E-9182227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
RTAVSLAELA SAGSSSSEAS GFQQALADSH PPAPVWSESY TVTSALPAAV GQGKIEGFTL  60
KEETVQGDGH LLGKRSHSED KMLARENRSG DTEHDDLQGT LLTSYTGAQG GQTVLPRTPG  120
SQSHQQNLST QTIQSGEGTS LQQYGNHSAV SQLQSGAGGG NAANGAARPR VRARRGQATD  180
PHSIAERLRR ERIAERMKSL QELVPNSNKT DKASMLDEII EYVKFLQLQV KVLSMSRLGG  240
AGAVAPLIAD VPSQGSGGVM STALGQASGP LALSQDGLAF EQEVARLMES NMTSAMQYLQ  300
NKGLCLMPIA LATAISSSSG KPILATVPGT GVDSSEKQNS DMQSIVLPFS SSSTTMGLRA  360
SASGSDAPIN ENSMNKASIE KVVAEKSNGI SPGLSSDVPK VGSQNREELL NRAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.130290.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531967.12e-98transcription factor bHLH62 isoform X1
RefseqXP_020531971.12e-98transcription factor bHLH62 isoform X1
TrEMBLA0A443PYM02e-97A0A443PYM0_9MAGN; Transcription factor bHLH68-like protein isoform X2
STRINGERM960815e-98(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-47LJRHL1-like 3