PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000618
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 412aa    MW: 46323.7 Da    PI: 4.8586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675988PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-3166PU_refplantGDBView CDS
PUT-175a-Picea_glauca-3167PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-1794141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +lv+ ++++G g+W+ +++  g+ R++k+c++rw +yl
        Pgl000618  94 KGPWTAEEDRKLVNFITMHGHGCWREVPKLAGLLRCGKSCRLRWTNYL 141
                      79******************************99************97 PP
2Myb_DNA-binding43.76.2e-14150190446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ E++l++d+++  G++ W++Ia+ ++ gRt++++k++w++
        Pgl000618 150 LSESEEKLIIDLHAAIGNR-WSRIAAQLP-GRTDNEIKNYWNT 190
                      5899***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2385143IPR009057Homeodomain-like
PROSITE profilePS5129423.93989145IPR017930Myb domain
SuperFamilySSF466892.81E-2891188IPR009057Homeodomain-like
SMARTSM007172.1E-1493143IPR001005SANT/Myb domain
PfamPF002491.8E-1594141IPR001005SANT/Myb domain
CDDcd001671.79E-1196141No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23144196IPR009057Homeodomain-like
SMARTSM007177.6E-13146194IPR001005SANT/Myb domain
PROSITE profilePS5129418.671146196IPR017930Myb domain
PfamPF002491.5E-12150190IPR001005SANT/Myb domain
CDDcd001678.55E-10151190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
NSTSHNTLSR YTDYKLYTEE IDPLRGNFLP LSRPAGPYSI SAGIFSTQRP ALEPLERSPN  60
VEKSTILKRD SCLFSDPLGK MGRQPCCDKV GLKKGPWTAE EDRKLVNFIT MHGHGCWREV  120
PKLAGLLRCG KSCRLRWTNY LRPDLKRGLL SESEEKLIID LHAAIGNRWS RIAAQLPGRT  180
DNEIKNYWNT RIKKKLRQMG IDPVTHKPLS QMQMQSSPTQ SLLLQENDEQ QQQQQQQQNE  240
PDQNHSNGSA ETLVLTAREP NDDIEPLENF NMEDSMQLFN VCSPTSVISL SGRTEEVDSD  300
DSDQVSKSFG NGGHAQYIGR ESSGVKAECG LSVWDQMGGV LGDPLSDYNS QWNVDLESWT  360
AGLDAHAASA SAWIQQLPDC QWNDFQGDFE ICSKSCPETL QRLGPFLDDD EM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27921965108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196RIKKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.48400.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE50.0A5JYE5_PICGL; R2R3-MYB transcription factor MYB1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-76myb domain protein 20