PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000825
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 321aa    MW: 37528 Da    PI: 8.0407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25769852PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55338821PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18124PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.41e-2468149186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W  +e+++ i++r e+e+++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  Pgl000825  68 QWGFNETKEFIAIRAELEKDFTQTKRNKTLWELISSRMKEKGFRRSSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 149
                6999***********************************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92261125IPR017877Myb-like domain
CDDcd122038.42E-2667132No hitNo description
PfamPF138372.3E-2268151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMMGGGGEVE SMGLGMGVMS ALPLLTPTVA ISSGDHLAAS NNSTVVTNNG AGGGGLNSSI  60
KKDDRIPQWG FNETKEFIAI RAELEKDFTQ TKRNKTLWEL ISSRMKEKGF RRSSEQCKCK  120
WKNLVNRYKG KETSDPENGR QCPFFDELHA IFTERAKTMQ RLMLESEGGN NNPKKKLKRL  180
KGLQGEKSSD DYSDDEEDEE EDSEDERIVR NKKRKADRER QRVTAEKSRA NSMQEVLQDF  240
FQQQQRIENQ WREYAERREQ DRRRLEQDWR QAMENLERER ILMEQVWREK EEQRRAREDG  300
RAEKRDALLT TLLNRLIRED L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1165139377DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.118590.0needle| somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854232.11e-110trihelix transcription factor GT-3b isoform X2
TrEMBLA9NX011e-150A9NX01_PICSI; Uncharacterized protein
STRINGERN156991e-110(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-40Trihelix family protein