PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000930
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 279aa    MW: 30839.7 Da    PI: 9.2125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25753098PU_unrefUnigeneView CDS
gnl|UG|Pgl#S40941584PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-2251PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09752245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      rW+ e  +l+ +a +++ ++   +W+ +a +++ g+t+ +++ ++ 
        Pgl000930  7 SRWSLEQNKLFENALAKFDKDtpdRWENVATCVP-GKTPAEVRRHYE 52
                     59********************************.**********95 PP
2Myb_DNA-binding46.11.1e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Pgl000930 114 PWTEEEHRLFLMGLNKYGKGDWRSISRNFVVSRTPTQVASHAQKY 158
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.803459IPR017884SANT domain
SMARTSM007171.6E-8557IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-12762IPR009057Homeodomain-like
PfamPF002494.7E-7852IPR001005SANT/Myb domain
CDDcd001671.00E-7855No hitNo description
PROSITE profilePS5129419.5107163IPR017930Myb domain
SuperFamilySSF466891.24E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18110161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-12111157IPR009057Homeodomain-like
SMARTSM007171.2E-12111161IPR001005SANT/Myb domain
PfamPF002492.4E-12114158IPR001005SANT/Myb domain
CDDcd001674.13E-11114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKVEEDSRWS LEQNKLFENA LAKFDKDTPD RWENVATCVP GKTPAEVRRH YELLVEDVNV  60
IEAGRVALPD YSENSYTPPE WMSDQSGDLT KQQAVSVKAP SAKASEQERK KGVPWTEEEH  120
RLFLMGLNKY GKGDWRSISR NFVVSRTPTQ VASHAQKYFL RLSSGNKEKK RSSIHDITSV  180
NGAEMKQPHL QQSSAITNSP NPAAVSRSSS MMYPSSLGGA TMVNSMGSPT GGNHMMLPPH  240
SLGQYSQKGI GGHSPGHIIP VSSLGMPQMG YPMQPTMHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-239711173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.74710.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.13e-81transcription factor SRM1-like
RefseqXP_024366443.13e-81transcription factor SRM1-like
TrEMBLA0A0D6R2Q11e-133A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGPP1S256_11V6.11e-80(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-65MYB family protein