PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001105
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24096 Da    PI: 9.8717
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40886858PU_refUnigeneView CDS
gnl|UG|Pgl#S55345964PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-16025PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.5e-29454151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s
  Pgl001105  4 KRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKISEFAS 54
               79***********************************************86 PP
2K-box58.23.5e-20821691299
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++ +  +  l+ L ++++ L+++ ++++GedLesL++keLq+Le+qL++++k+i ++K++++ ++ + l +k + l+ee+ +L++kl 
  Pgl001105  82 QNIKFGELRLKTLHEKMDVLKKKEKNMVGEDLESLTMKELQRLEKQLQTGIKRISDRKMRIFAQSSKLLIQKVRILEEEKIELQTKLS 169
                555666677899************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.922156IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-30155IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-28176IPR002100Transcription factor, MADS-box
CDDcd002654.42E-31267No hitNo description
PfamPF003194.8E-25552IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-171833IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-173354IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.95584174IPR002487Transcription factor, K-box
PfamPF014861.6E-1591168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEMKRIQNPS RRQVTFSKRK NGLLKKAFEL SVLCDAEVAL IIFSETGKIS EFASHDESVA  60
TILEKYRIYT ETNGNLGSTS LQNIKFGELR LKTLHEKMDV LKKKEKNMVG EDLESLTMKE  120
LQRLEKQLQT GIKRISDRKM RIFAQSSKLL IQKVRILEEE KIELQTKLSA RGDSSTSATN  180
LDLGVIPTDF LIVQWLAVPV TGTEMAIDSP IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17171674MEF2C
5f28_B2e-17171674MEF2C
5f28_C2e-17171674MEF2C
5f28_D2e-17171674MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.163340.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMI61e-124A9NMI6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-37AGAMOUS-like 8