PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001177
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 189aa    MW: 20970.6 Da    PI: 10.3713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350041PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-5345PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-5346PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202676155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r++lg+f+tae+Aa+a++ a+++l+g
  Pgl001177 26 THFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEDAARAYDDAARALRG 76
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-162684No hitNo description
PfamPF008474.2E-132676IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222785IPR016177DNA-binding domain
SMARTSM003801.4E-342790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-312784IPR001471AP2/ERF domain
PROSITE profilePS5103222.6692784IPR001471AP2/ERF domain
PRINTSPR003678.4E-112839IPR001471AP2/ERF domain
PRINTSPR003678.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAVETMRRAR VGIGGCESES RAVKETHFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDTA  60
EDAARAYDDA ARALRGPKAK TNFALAADNT ASAALARTTN ARWTRTLHPQ KQWPHDLKAS  120
SVPALESSKR HKVFLGSDCR PEFESRNNSP CAALSEQKTS SSLRKTPLLL DLNLPPSIDE  180
DNDNESAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212485264ATERF1
3gcc_A1e-212485264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.37930.0root| somatic embryo| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.15e-39PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9LW497e-33ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLD5A9F41e-135D5A9F4_PICSI; Uncharacterized protein
STRINGXP_010278126.12e-38(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-23ethylene responsive element binding factor 3