PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001178
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family YABBY
Protein Properties Length: 189aa    MW: 20690.5 Da    PI: 8.4947
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334102PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-36709PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-8049267PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY192.22.4e-5981555170
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
                s++eq+Cyv+CnfC+tilavsvPs+slf++vtvrCGhC +llsvn++ as  l a +         ++++  +++ + +       s++ s+++   ++ 
  Pgl001178   8 SAAEQLCYVHCNFCSTILAVSVPSSSLFNIVTVRCGHCNHLLSVNMMGASPPLEAGQ---------IQNDYSKDSASSSA------SPTISERT--GNSY 90 
                679******************************************999887776665.........23332222222211......11111111..1222 PP

      YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +e+ ++     PPekrqrvPs ynrfikeeiqrika+nPdi h+eafsaaaknWahfP+ihfgl
  Pgl001178  91 AGNEAVKMFS-SIPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGL 155
                3334445555.67***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-659155IPR006780YABBY protein
SuperFamilySSF470953.27E-799149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.6E-4104147IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSGCIESSAA EQLCYVHCNF CSTILAVSVP SSSLFNIVTV RCGHCNHLLS VNMMGASPPL  60
EAGQIQNDYS KDSASSSASP TISERTGNSY AGNEAVKMFS SIPPEKRQRV PSVYNRFIKE  120
EIQRIKAKNP DIRHKEAFSA AAKNWAHFPH IHFGLMLENN KQAAIDKGNL REGTQIGTVK  180
DGRMTTNLC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.115090.0stem| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424060.23e-66putative axial regulator YABBY 2 isoform X1
SwissprotQ8GW464e-61YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD5ADY51e-124D5ADY5_PICSI; Uncharacterized protein
STRINGXP_006487832.13e-65(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-62YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]