PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001271
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 150aa    MW: 17093.2 Da    PI: 4.4353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336682PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-21385PU_unrefplantGDBView CDS
PUT-175a-Picea_glauca-26034PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-074282644
                     HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +eE +++ +a + + ++   +W+ +a+++g g+ + ++k ++
        Pgl001271 42 AEENKIFENALAIYDKDtpdRWHNVASMVG-GKNPDEVKRHY 82
                     8*****************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.0E-73688IPR001005SANT/Myb domain
SuperFamilySSF466896.58E-104293IPR009057Homeodomain-like
CDDcd001673.15E-64286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMNLEYPSMV IVQNVRSEQR KESIFNFNCG GNVQQIFGGM DAEENKIFEN ALAIYDKDTP  60
DRWHNVASMV GGKNPDEVKR HYEILLEDLN CIEAGKVPIP NYTFDITTKD EVPVHYKDGG  120
EDGQVTVSGS NDTVVWTNEE QRLLMHLKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-27421021373RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.237250.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254802.14e-29PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1735e-27RADL6_ARATH; Protein RADIALIS-like 6
STRINGXP_010254802.11e-28(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-29RAD-like 6