PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl001449

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Nin-like

Protein Properties

Length: 719aa MW: 79183.2 Da PI: 6.6422

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55343104	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-32128	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	7e-29	231	281	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+ l++yF +++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pgl001449 231 EKNISLHILQQYFTGSLKDAAKSIGVCPTTLKRICRQHGIARWPSRKINKV 281 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.188	219	301	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-25	233	281	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.94E-24	612	705	No hit	No description
PROSITE profile	PS51745	22.227	620	702	IPR000270	PB1 domain
SMART	SM00666	4.8E-23	620	702	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.6E-23	621	701	No hit	No description
CDD	cd06407	3.08E-30	621	701	No hit	No description
Pfam	PF00564	1.4E-17	621	701	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
XTGHKQWYHA EFTAGDGGIG RMFLSLEDQA CYVGDRAMQG FRDICSEHRL EKGQGVPGKA 60 FESNQPFFSN DVKNYNIMDY PLVHYARMFT FSAAVAVRLR STHTGSDDYV LEFFLPIGCN 120 DSAEQQLLLN NLSITMQRVC RSLRTVSDDE LKEDGNKDHD YAQNGCTNFP SVGMLQRSHE 180 PAQREPNIMS FAGSQFCQEK YLEEGVVGHN SHQQQEYTSK KKLERRRGTS EKNISLHILQ 240 QYFTGSLKDA AKSIGVCPTT LKRICRQHGI ARWPSRKINK VSRSLKKLQG VIDSVQGADA 300 TLKLNAITTD IMTAASMVQG LQMHSGILPS QGSWAVSWSS PEDFITRKAV PVGLGTAVPL 360 EETTYQKENL NNTPQTILST GLESKLSLKA ASEAHGGCDI HIQRPSADGN ISSSKNDLLA 420 RHFRESAQQG SLAYMKGQLE VTEKDKNVQS VGFVGHEIVR NSFSAVAPFG ERHQPVTYRS 480 DTSEFNSIPF TGKTRGFAEG IVENCQQVGH QFQGGKHDSR NLKNVQTGEN LSLQDTDCQV 540 TSKHSDFFVL VNGKEPIVNS ADKEVPQHEQ NLPGFSGMTN SSAGSGSSSS SLQGCDSSSP 600 TVSGVDGLQR ESHNKDESSA ITVKAKYKED MVRFKLPLSS GFSELCDEVA KRFKLIVGTF 660 QLKYQDDDDE WVLLACNDDF HECIDVMNFS GGHAIRLLVR DLVSVVGSSS GSCGDVLQC

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

XTGHKQWYHA EFTAGDGGIG RMFLSLEDQA CYVGDRAMQG FRDICSEHRL EKGQGVPGKA  60
FESNQPFFSN DVKNYNIMDY PLVHYARMFT FSAAVAVRLR STHTGSDDYV LEFFLPIGCN  120
DSAEQQLLLN NLSITMQRVC RSLRTVSDDE LKEDGNKDHD YAQNGCTNFP SVGMLQRSHE  180
PAQREPNIMS FAGSQFCQEK YLEEGVVGHN SHQQQEYTSK KKLERRRGTS EKNISLHILQ  240
QYFTGSLKDA AKSIGVCPTT LKRICRQHGI ARWPSRKINK VSRSLKKLQG VIDSVQGADA  300
TLKLNAITTD IMTAASMVQG LQMHSGILPS QGSWAVSWSS PEDFITRKAV PVGLGTAVPL  360
EETTYQKENL NNTPQTILST GLESKLSLKA ASEAHGGCDI HIQRPSADGN ISSSKNDLLA  420
RHFRESAQQG SLAYMKGQLE VTEKDKNVQS VGFVGHEIVR NSFSAVAPFG ERHQPVTYRS  480
DTSEFNSIPF TGKTRGFAEG IVENCQQVGH QFQGGKHDSR NLKNVQTGEN LSLQDTDCQV  540
TSKHSDFFVL VNGKEPIVNS ADKEVPQHEQ NLPGFSGMTN SSAGSGSSSS SLQGCDSSSP  600
TVSGVDGLQR ESHNKDESSA ITVKAKYKED MVRFKLPLSS GFSELCDEVA KRFKLIVGTF  660
QLKYQDDDDE WVLLACNDDF HECIDVMNFS GGHAIRLLVR DLVSVVGSSS GSCGDVLQC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q0JC27	1e-89	NLP2_ORYSJ; Protein NLP2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	2e-89	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]