PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001514
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 668aa    MW: 76039.4 Da    PI: 7.0966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339476PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-25968PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09471511340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       W+ eE +ll ++v+++++g   +W+ Ia+++g+gRt +++
        Pgl001514 471 HWSREEIDLLRKGVQKYPKGtsqRWEVIANYIGTGRTVEEI 511
                      6************************************9886 PP
2Myb_DNA-binding21.65e-07611655345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  l++a k ++++   +W+++a  ++ g++  qc  ++ 
        Pgl001514 611 AWSAVQERALIQALKTFPKEtpqRWERVATAVP-GKSKVQCMRKFT 655
                      8********************************.*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.79E-2173175IPR001623DnaJ domain
PRINTSPR006256.3E-98199IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.1E-2193198IPR001623DnaJ domain
SMARTSM002712.0E-1696171IPR001623DnaJ domain
CDDcd062578.15E-1497168IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PfamPF002263.2E-1897176IPR001623DnaJ domain
PRINTSPR006256.3E-9120135IPR001623DnaJ domain
PRINTSPR006256.3E-9151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.9E-6466512IPR009057Homeodomain-like
PROSITE profilePS512937.003467522IPR017884SANT domain
SMARTSM007171.3E-7468521IPR001005SANT/Myb domain
PfamPF002499.2E-8470511IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-8470513IPR009057Homeodomain-like
CDDcd001671.04E-5472511No hitNo description
PROSITE profilePS512939.109607662IPR017884SANT domain
SMARTSM007172.7E-9608660IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-9610658IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-4611657IPR009057Homeodomain-like
PfamPF002493.5E-6611655IPR001005SANT/Myb domain
CDDcd001676.38E-6611658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MPITNNWPLL TYSVELEDGE PLYVSSNCLP GKASRWEPAG HSFHAAALCL LGFKEDTDEE  60
NDDKSESGEK DKGFTASYDS YRFKGKKKSA DGKEQQDHYA LLGLGHLRYL ATEDQIRKSY  120
REAALKYHPD KQASILLAEE TEEAKQSKKE EIESHFKIIQ EAYEVLIDPV KRRIYDSTDE  180
FDDEVPSDCA PQDFFKVFGP VFMRNSRWSV TQPVPPLGDD NTAIKEVDKF YDFWDSFKSW  240
REFPHADEFD LEQAESREHK RWMERQNAKL QEKAKKEEYA RIRSFVDNAY KKDPRILRRK  300
EEEKAEKLRK KEARLQAKRM KEEEAARIAE EERLRKEEEE KRAAEAALAQ KKSKEKEKKL  360
LRKERSRLRT AAASVVSKKL LGIVEDDVEK LCASLEIEKL RILCDQMGQK GELERAQLLR  420
DALASDADGT KSIEKTVLQN DTVQGHTVSQ GLQGHAKAED LLNSYEKKEK HWSREEIDLL  480
RKGVQKYPKG TSQRWEVIAN YIGTGRTVEE ILKAIKTVLL QKPDTANSFD SFLERRKNAN  540
PITSPLTTRD EVGDSPTNGC VADTIVGEKA KGVTEQQASG GSNRSADGKG LSGGSIQSVA  600
NGSVAGNDQD AWSAVQERAL IQALKTFPKE TPQRWERVAT AVPGKSKVQC MRKFTEMKEN  660
FRNKKSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1919329620123Zuotin
5dje_B4e-1919329620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297320RRKEEEKAEKLRKKEARLQAKRMK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.59450.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D6R2D90.0A0A0D6R2D9_ARACU; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain