PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001515
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 668aa    MW: 72462.2 Da    PI: 8.2356
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348178PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-44203PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.96e-43276353178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +CqvegC++dl++ k+yhrrhkvCe+hsk+++v+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk+q+
  Pgl001515 276 RCQVEGCNTDLTSSKDYHRRHKVCEIHSKSAKVMVAGLEQRFCQQCSRFHVLSEFDDGKRSCRRRLAGHNERRRKPQP 353
                6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-34269338IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.411274351IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-40275356IPR004333Transcription factor, SBP-box
PfamPF031102.2E-32277350IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
XTRFSFEGRG LCRVVLTVSG NGFAWTVKAI LSGNSVLMDW DMKASSSPWD WENIMLFPNR  60
GADVDKRAQW ENETGGGGDT LMDDGSVHNG SVYSPGCGSG STFGYGSSSR SSVSVDCSLK  120
VEPDLCKIKM GSMESSDVED RNVNFLDLKS QVESRTDDQE RGKSSQKRGN AELNGSKHCR  180
GTNEHQEPQR CSKDSKFKAR AGHVEAKDIE NTDKNSSALA IPVSACSGES HIGLKLGKRT  240
YFEDISGGGQ IRTTPIAVFP GPLATRAKKP HTQSARCQVE GCNTDLTSSK DYHRRHKVCE  300
IHSKSAKVMV AGLEQRFCQQ CSRFHVLSEF DDGKRSCRRR LAGHNERRRK PQPDSMAVNS  360
ARFAPSFYDN RHTGLLLDAS SFMHPRIFSS SVLDDHGDFK LGQGKGTWPK IVKSEDPSMF  420
DDHPQTSGVN RPSFTNALSR QSADRLLQLL QSSKASSVNV LSQGIQHYTH SPANPLTEAL  480
SLSFSPGTGV IAGLEVASAT QNLLGVSDSG CALSLLSSQS LGSRALGSAS LDLATRPGAT  540
LEQFMHENHS TMDQISLQGM QHNFSLNSSS QSSTGLISNG YPPPGVNFID KVQVGSLTPN  600
IGGIGNFETP MHGFLQGQEF RSSQDARSKA VRRTIDLMHR SSQTQGNESQ GQSGILQHGN  660
NGSMNNLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-312773501184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.64030.0cone
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7280.0A0A0K0M728_PINTB; SPL3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-44squamosa promoter binding protein-like 10