PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001589
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 633aa    MW: 71040 Da    PI: 5.1339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342166PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-17776PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.36.7e-1352666332374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL+ecA+a+++   ++a++l+arl++ +   gdp+qRlaay++e+L a+l+ s+ ++yk+l+++e +   sse l+++++++ev+P++kf++++aN a
  Pgl001589 266 KSLLIECAKAIAD--DRNADKLIARLRQVVDIFGDPLQRLAAYMVEGLVAKLHFSGGHIYKTLKCKEPT---SSELLSYMHILYEVCPYFKFGYVAANGA 360
                689********97..689**************************************************9...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea++ ++rvHiiDf+i qG QW++L+qa+a+R++g+p++Ri gv++p+s+  + + l+ +g+rL+k+Ae+++vpfef++l +   +d+  ++L+++ g
  Pgl001589 361 IAEAFKDKDRVHIIDFQIAQGSQWVTLIQAFAARQGGSPHVRIAGVDDPNSEyaRGQGLQLVGKRLSKLAESCQVPFEFHAL-SVFGSDVYADMLDIRAG 459
                **************************************************99999**************************5.888999*********** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                EalaVn+ lqlh+++desv+++++rd++L++vk+l P+vv++veqea++n+++F+ rf+e+l+yy+a+f+sl+++lpr+s+er++vE+++l+r+ivnv+a
  Pgl001589 460 EALAVNFPLQLHHMPDESVTTSNHRDRLLRMVKGLAPNVVTLVEQEANTNTAPFFPRFMETLSYYTAMFESLDVTLPRDSKERVSVEQHCLARDIVNVIA 559
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                cegaer+erhe ++kWr+rl++aGFk++pls ++++++k +l+ ++++ yr+ e++++l+lgW dr L+++SaW+
  Pgl001589 560 CEGAERVERHELFGKWRSRLTMAGFKSYPLSAHVNSTIKVVLNSYNQN-YRLVEKDEALYLGWLDRDLIVASAWK 633
                **********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.423239614IPR005202Transcription factor GRAS
PfamPF035142.3E-132266633IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
TDLQKCDYRH FYGVELWWME PGTILKERSR GRPPVRFCLD YTENGIPXQL MNWSLQAALI  60
NISKNSGXII QRSSHNDGSY IHESFPYNSE HSHESSICIQ SSSGGSPLSS QHSQTYSCDS  120
RYFHTAEDAV DLVGNGYSDN EQPANLKMLE EIKTVLLGPD GDDTADMEYV YVDNAIHSNS  180
EWSLDALSDF NDFLDQTSNP GYPQTNQADS SRAPDNLQQL PNHGDQNVKI ETANEVTLKT  240
EHCSPSNSHE EQPDINGLES PQGDVKSLLI ECAKAIADDR NADKLIARLR QVVDIFGDPL  300
QRLAAYMVEG LVAKLHFSGG HIYKTLKCKE PTSSELLSYM HILYEVCPYF KFGYVAANGA  360
IAEAFKDKDR VHIIDFQIAQ GSQWVTLIQA FAARQGGSPH VRIAGVDDPN SEYARGQGLQ  420
LVGKRLSKLA ESCQVPFEFH ALSVFGSDVY ADMLDIRAGE ALAVNFPLQL HHMPDESVTT  480
SNHRDRLLRM VKGLAPNVVT LVEQEANTNT APFFPRFMET LSYYTAMFES LDVTLPRDSK  540
ERVSVEQHCL ARDIVNVIAC EGAERVERHE LFGKWRSRLT MAGFKSYPLS AHVNSTIKVV  600
LNSYNQNYRL VEKDEALYLG WLDRDLIVAS AWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6127163225378Protein SCARECROW
5b3h_A3e-6127163224377Protein SCARECROW
5b3h_D3e-6127163224377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.49040.0root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.10.0scarecrow-like protein 21
RefseqXP_029116879.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0B4U8K10.0A0A0B4U8K1_PINRA; SCL10
STRINGGLYMA02G47640.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]