PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001666
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 604aa    MW: 65875.9 Da    PI: 6.8759
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349074PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-9969PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29318376259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt++  Cpv+k+v+r aed +++++tYeg+Hnh 
  Pgl001666 318 SDGCQWRKYGQKMAKGNPCPRAYYRCTMSpCCPVRKQVQRLAEDRSILITTYEGSHNHM 376
                7***************************9899**************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-31302377IPR003657WRKY domain
SuperFamilySSF1182903.92E-26310378IPR003657WRKY domain
PROSITE profilePS5081127.921312378IPR003657WRKY domain
SMARTSM007747.0E-34317377IPR003657WRKY domain
PfamPF031067.2E-26319375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
XYDNRAKDFF PHEVGRLSFR LLPVDGESKA EDGPGDMMSQ GPEDEDDKPA INVSTGLRLV  60
TAQARNAASD RSTVEMEDCA SPINSQETSN PNEMDGEPNS ELVAVQKELN RMNEENQRLR  120
FMLNQINSSY NNLQLQLASL MKQQPQNYGH AVREQVHKEE KLNIFRGLTG NNIGEAADDQ  180
TPIQRQFLEI KDLSRLNSGT NAQEDSHTSE ARRIHGENDQ EESKALLTFN HIDNKHARDH  240
DNHGSTPKGH DSPDRTPSPH PSPSHHENGG TPQREGSLDR RSPGWVPHKM QKIVDQTDAT  300
IRKARVSVRA RTESPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMSPCCP VRKQVQRLAE  360
DRSILITTYE GSHNHMLPPA ATAMASTTAA AASMLLSGSS TSADNIALNA SFMAGALMQH  420
PCNTSTASIS ASAPFPTITL DLTHNPNQMA TAPGHMAASN PRALAGLQAH AMPFVGIPHQ  480
FPTNTPQGAL YHGQSIYNAP SMFAPLAGQM QRPPQPMMPT PSKLNIQPGQ QQQQQQQQPS  540
FIDTVSAATA AITSDPNFTA ALAAAITSLI NNNNNANSIS KPNSSQAVNP SPQVAAHVKT  600
DHNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22304380176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.109420.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QNA71e-174A0A0C9QNA7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18796_2280 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-70WRKY family protein