PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001677
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 600aa    MW: 67742.2 Da    PI: 6.0376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S59016396PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32550PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.3e-1012345942373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++Ll++ + v+ ++le aqa+Larl++ +sp+g+++qR++ yf+eAL        +++    + s  s+ + +++++a k fse+sPi+ f+++taNq 
  Pgl001677 234 LQQLLDATKYVELNSLEIAQAILARLNQYVSPRGKALQRATYYFKEALGGLR-P-LQQTN---SKSYLSPLQLVHKINACKNFSEISPIPYFANFTANQV 328
                589*********************************************8632.2.23344...44444444589************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                +lea+e+ +++HiiDfd++ G+QW+++lq++a Rp+gpp lR+T+vg     ++ e++ ++e+L  fAe+l++pf f+v+   + edl+ ++L++k+gE+
  Pgl001677 329 LLEALETVDKIHIIDFDMGLGGQWASFLQEIALRPGGPPALRLTAVGY----ESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNHSMLNLKEGET 424
                ************************************************....99*************************9999***************** PP

       GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                +aVn +l ++ ll ++ s++    ++L+l+++l+Pk+vvvv++e +  ++sF+++fleal++y+ lf+slea  + + ++  ++E+++++++i+nvv ++
  Pgl001677 425 IAVNYSLGMQGLL-SKDSIA----SILHLINRLRPKIVVVVDNENEQAGSSFAQKFLEALHFYALLFESLEAV-HMNMDTIEMIEKFVMAPRICNVVEAA 518
                ************9.444444....5*********************************************988.67889999****************99 PP

       GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdrpLvsvSaW 373
                 ++ + + e+l +Wr+++++aGF+p+ +s+++ kqa++l r  +   g+  e    ++++ l+lgW+++ LvsvSaW
  Pgl001677 519 YKR-QREGENLPHWRSMFQAAGFTPMMMSNFTHKQAESLSRSRQqRFGFCFEavkkQQEQILLLGWQRQVLVSVSAW 594
                985.888899********************************997889876655544566677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.349207570IPR005202Transcription factor GRAS
PfamPF035142.5E-98234594IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
XSMGMEYLEN ILLQSPESNN NSQIPCLMGE PCLMGSEYPL HGIKAEEAVL QQTQFHEAAD  60
SQFSEFLCVN SDINSFTFYG DNGGHTLSPF ALNPPSTAVF PPSSALFTPN IHGPNPPPLS  120
FAPDFKPFKV PMDEKHPELQ LPYGANPSYP EKNVVFPMPA APRGHMGVAH EGFPEFEKSL  180
HWQQIQQREF QPAWKTMINR GVRDPLFPPV KQEWSPRTHQ GKVDLDEVQK SAILQQLLDA  240
TKYVELNSLE IAQAILARLN QYVSPRGKAL QRATYYFKEA LGGLRPLQQT NSKSYLSPLQ  300
LVHKINACKN FSEISPIPYF ANFTANQVLL EALETVDKIH IIDFDMGLGG QWASFLQEIA  360
LRPGGPPALR LTAVGYESME MHLIRENLCT FAENLNIPFT FQVVEIPQNE DLNHSMLNLK  420
EGETIAVNYS LGMQGLLSKD SIASILHLIN RLRPKIVVVV DNENEQAGSS FAQKFLEALH  480
FYALLFESLE AVHMNMDTIE MIEKFVMAPR ICNVVEAAYK RQREGENLPH WRSMFQAAGF  540
TPMMMSNFTH KQAESLSRSR QQRFGFCFEA VKKQQEQILL LGWQRQVLVS VSAWNVNNVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4124459529378Protein SCARECROW
5b3h_D1e-4124459529378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.51280.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M6Y20.0A0A0K0M6Y2_PINTB; HAM2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-66GRAS family protein