PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001716
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 590aa    MW: 64513.9 Da    PI: 7.6974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337577PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-48517PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08497546147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ I  +     k+Rt  ++k++w ++
        Pgl001716 497 RRPFTVAEVEVLVQAVEKLGTGRWREIKLHAFdhaKHRTYVDLKDKWKTL 546
                      6799***************************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.06E-5279374IPR029071Ubiquitin-related domain
PROSITE profilePS5129417.121492551IPR017930Myb domain
SuperFamilySSF466891.35E-16494588IPR009057Homeodomain-like
SMARTSM007175.7E-8496549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-11497547IPR009057Homeodomain-like
PfamPF002491.5E-5497546IPR001005SANT/Myb domain
CDDcd116604.36E-18498548No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGPQEDHEGR GENDVNEISS VHQQRKETAY VRTEDEAVLD VHTSLVSLTS NAGVSIVAGL  60
NSHELGSSVS TEKGPHCIEN KPCDSSMNGL KDMINIFRDD DDNSSDITNP STVTNKLWKT  120
LPAKGTKFGR SISSKYRIIA STRKRNYSKM VVNTALFSIL DFLKGSPIHL PGTFWPSHSL  180
SCVGVALVFF SDLELDYDGT VHTESPGSGL RWKRQRTVRY PPIKRKMLAA GFSTSDINAN  240
TSCTVLDVNA LDIEHYDSPT KPCSAKSGSI PSPGSAPVSS SQKAVKLGIK SFTVPELFIE  300
VPESATVANL KKAATEAVIN LLEGGFQVRI LLQGMKVTDE NATLIQVGAS HPEKLETVGF  360
MLEPNSIPSS STGADDPLFM LSHAASRTSS TYPKASCSGT SIDIEVNKGL IDGSCSETNG  420
MFSADVAQMA GCQTQVDINQ WVMSESDLIM SSSHPQAVSY SGALVVHPSV DDSNQGLTLV  480
PVRHRSRRAD IGKRRLRRPF TVAEVEVLVQ AVEKLGTGRW REIKLHAFDH AKHRTYVDLK  540
DKWKTLVHTA TIAPHQRRGE PVPLELLDRV IRAHSYWTKR QTNQMVNHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-484815871107Telomere binding protein TBP1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.128540.0needle| root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-64TRF-like 2