PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl001745

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

EIL

Protein Properties

Length: 579aa MW: 64946.9 Da PI: 6.8231

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333311	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-22335	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	458.7	4.2e-140	8	368	32	353
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX CS EIN3 32 tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqterss 131 +++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+LraWWkekv+fdrngpaai+kyqa+++ ++ ++s+ + Pgl001745 8 SDTAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHATPGANESNMV-VAP 106 67899********************************************************************************998877755.9 PP ----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTS CS EIN3 132 eshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqs 231 ++h+l+elqDTtlgSLLsalmqhcdppqrr+plekg++pPWWPt +e+ww++lgl+k qg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqs Pgl001745 107 TPHTLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGISPPWWPTTNEDWWPQLGLPKGQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQS 206 ************************************************************************************************** PP SSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX...XXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX....................... CS EIN3 232 kylqdkmsakesfallsvlnqeekecatvsah..ss...slrkqspkvtlsceqkedve.gkkeskikhvqavktta....................... 302 k+lqdkm+akes+++l+v+nqee+++++ ++ ++ ++++ ++t+s+++++dve +++++ + +++ ++ Pgl001745 207 KCLQDKMTAKESATWLAVVNQEEALARQKNPNacPPisaAESTHAGSMTFSSSSEYDVEgFEDDPN-SIYTNNDVQDckpqdldllnsevqeckpqefdh 305 ************************999976335434444999*********7333333.322222222245666************** PP ...............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ...............gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 +++++rkrk p+e+ ++++ ++tc ++q++++e +l+f+d++ +++++ Pgl001745 306 fnigisnegvsalqdNVDFIRKRK-LPQEPPL-EDQK-VYTCPHEQCPYHERQLGFSDQSLRNSHQ 368 *******************9.5555555.5554.6**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	6.8E-121	8	229	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.6E-74	103	238	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.7E-61	108	233	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
QRKGKYHSDT AKQRQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY GIIPEKGKPV 60 SGASDNLRAW WKEKVRFDRN GPAAIAKYQA EHATPGANES NMVVAPTPHT LQELQDTTLG 120 SLLSALMQHC DPPQRRYPLE KGISPPWWPT TNEDWWPQLG LPKGQGPPPY KKPHDLKKAW 180 KVGVLTAVIK HMSPDIAKIR KLVRQSKCLQ DKMTAKESAT WLAVVNQEEA LARQKNPNAC 240 PPISAAESTH AGSMTFSSSS EYDVEGFEDD PNSIYTNNDV QDCKPQDLDL LNSEVQECKP 300 QEFDHFNIGI SNEGVSALQD NVDFIRKRKL PQEPPLEDQK VYTCPHEQCP YHERQLGFSD 360 QSLRNSHQST CAYRTDLQGM GYQRPEPQES KSLFCISTGQ PNQLQVQGKV SMFPSEKEGQ 420 TTSNGNVNLN PLSTTSSAIL TSNQQPINEL LALYDGLHQN KTATLGNLKM MNDHSQLEVN 480 MHPASQGGEI FKITPDDNLF GQGVVAGNNG NNFGSNMQLV MREGLNLDQS RVYDQPFIHH 540 CQEMNGDMKF VSAYNNISID YAVPETVSKY DNSIWYFGA

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

QRKGKYHSDT AKQRQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY GIIPEKGKPV  60
SGASDNLRAW WKEKVRFDRN GPAAIAKYQA EHATPGANES NMVVAPTPHT LQELQDTTLG  120
SLLSALMQHC DPPQRRYPLE KGISPPWWPT TNEDWWPQLG LPKGQGPPPY KKPHDLKKAW  180
KVGVLTAVIK HMSPDIAKIR KLVRQSKCLQ DKMTAKESAT WLAVVNQEEA LARQKNPNAC  240
PPISAAESTH AGSMTFSSSS EYDVEGFEDD PNSIYTNNDV QDCKPQDLDL LNSEVQECKP  300
QEFDHFNIGI SNEGVSALQD NVDFIRKRKL PQEPPLEDQK VYTCPHEQCP YHERQLGFSD  360
QSLRNSHQST CAYRTDLQGM GYQRPEPQES KSLFCISTGQ PNQLQVQGKV SMFPSEKEGQ  420
TTSNGNVNLN PLSTTSSAIL TSNQQPINEL LALYDGLHQN KTATLGNLKM MNDHSQLEVN  480
MHPASQGGEI FKITPDDNLF GQGVVAGNNG NNFGSNMQLV MREGLNLDQS RVYDQPFIHH  540
CQEMNGDMKF VSAYNNISID YAVPETVSKY DNSIWYFGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	7e-80	107	239	2	134	Protein ETHYLENE INSENSITIVE 3
4zds_B	7e-80	107	239	2	134	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.5044	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020517603.1	0.0	LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	1e-167	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A0C9RQ59	0.0	A0A0C9RQ59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3637_3249 transcribed RNA sequence
TrEMBL	A0A0D6QW98	0.0	A0A0D6QW98_ARACU; Uncharacterized protein
STRING	XP_010243659.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-154	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]