PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001905
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 547aa    MW: 60440.2 Da    PI: 6.6106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349408PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-6665PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.81.2e-971745092339
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + Ll+cA+ v++ + e+a + +a l+ +as++gdp+qR++++f+ ALa+rl++  +    ++++s++ +k+ +  + a+k++++++P+ kf++lt Nqa
  Pgl001905 174 LHSLLDCAKIVDT-EPERAGQSVAYLQSIASQHGDPTQRIVFHFADALAKRLSKGIE-QKPQFQSSDECSKSFEGLTLAYKALNDACPYSKFAQLTGNQA 271
                689******9988.7899***********************************9333.333445555555667888999********************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                Ilea++++e++Hi+Df+i qG+QW+aLl+a+a+Rp+g+p +++iTg+ +p+ g   + +l +tg+rL++fA+ l+++fef + v+k+++++el++L++++
  Pgl001905 272 ILEAMDKAEKIHIVDFGIVQGVQWAALLHAFATRPGGKPqKIKITGIPAPTLGqnPTSSLLATGKRLTEFAKLLDLEFEFCP-VSKHMSEVELSTLKIEQ 370
                ***********************************777769*********999888999***********************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnv 297
                +E++aVn++lql++ll   ++++++  ++Lkl   lsPkvv++ e ea +n+  F  rf +al+y+sa+fds+  ++++r+  er +vE+ +++++i+ +
  Pgl001905 371 DECIAVNFMLQLYNLL---GDSPEPLVKILKLAHALSPKVVTLGEYEAYLNACHFQVRFRNALDYFSAFFDSMePTNMSRDCAERLNVEKLFFAEKIMGI 467
                ****************...666666678*********************************************778999999****************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                va egaer+ r e   +Wr  +e+aGFk  +ls++a +qa+ 
  Pgl001905 468 VAFEGAERKTRLEGRDQWRILMESAGFKFTNLSHYAKSQAEF 509
                ***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.478147524IPR005202Transcription factor GRAS
PfamPF035144.0E-95174509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
XDSSNPCEST ESSELPNGGS GYRRHSSEDA AAWQSEFGIL GEAFKRSSPT SWTPDTTTEQ  60
LLCSSPSADL LSAASSELLS TNSLKGKAAL QEQYSGAAGG GHDFQTLHHR MPNVHQSVCP  120
PMQQLIREPS TPPQKRQQGQ QQQDPLKGKR EEDPPKPEID ALDRHMQGQR SDLLHSLLDC  180
AKIVDTEPER AGQSVAYLQS IASQHGDPTQ RIVFHFADAL AKRLSKGIEQ KPQFQSSDEC  240
SKSFEGLTLA YKALNDACPY SKFAQLTGNQ AILEAMDKAE KIHIVDFGIV QGVQWAALLH  300
AFATRPGGKP QKIKITGIPA PTLGQNPTSS LLATGKRLTE FAKLLDLEFE FCPVSKHMSE  360
VELSTLKIEQ DECIAVNFML QLYNLLGDSP EPLVKILKLA HALSPKVVTL GEYEAYLNAC  420
HFQVRFRNAL DYFSAFFDSM EPTNMSRDCA ERLNVEKLFF AEKIMGIVAF EGAERKTRLE  480
GRDQWRILME SAGFKFTNLS HYAKSQAEFF CIITVRGILY KNPRVSSLWH GKLGLSSLSQ  540
PGAVASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1151735104339GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.58420.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614707.11e-124PREDICTED: scarecrow-like protein 4
RefseqXP_017614714.11e-124PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I01e-120SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2U7MTK50.0A0A2U7MTK5_PINRA; PIN2 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-112GRAS family protein