PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001976
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 536aa    MW: 60205.9 Da    PI: 9.0969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346139PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10724PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-16453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G++ W++++++mg  + R +k+c +rw +yl
        Pgl001976  4 RQRWQPEEDALLRAYVKQYGPREWNLVSQRMGktLDRDAKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding34.35.6e-1159103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
        Pgl001976  59 KGSLTEEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.018157IPR017930Myb domain
SMARTSM007175.3E-13355IPR001005SANT/Myb domain
SuperFamilySSF466892.88E-21498IPR009057Homeodomain-like
CDDcd001673.99E-9653No hitNo description
Gene3DG3DSA:1.10.10.601.5E-20660IPR009057Homeodomain-like
PfamPF139217.1E-14769No hitNo description
SMARTSM007179.4E-1058106IPR001005SANT/Myb domain
PROSITE profilePS5129417.99158108IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-1561108IPR009057Homeodomain-like
CDDcd001676.69E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MKERQRWQPE EDALLRAYVK QYGPREWNLV SQRMGKTLDR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKE RRKERQNLDS  120
ANSREGGKYD HILETFAEKY VQKKICPTSL PPILMPCPSP SPLLTLSVPT GSTYADNICL  180
ANVKTTPSVS TGPIVSQMAN LHGSMGLTLP VIKGKMPSAR EIEPRLTLES LGSTRSMLEP  240
ELALQCNASA MDLELTPTYL GTSSSAVDAA SSLPPWMSNV PTAHAQVHAS GGSDVKTMAS  300
TFILEKDTPF SSKSIHINSS PSVSLSLSPS SSDPVVSSGS ASPASEVIAP RSWLQDTMRH  360
QESINGVAGG IAKEGKVNLP WCALEKQVGT SSFDPNLASS KQAMDNLIMQ QLPTFLQYCK  420
DLEEGRQSWF MHKKEATWRL SRLEQQLESE KARKRREKIE EVGSKIRALR EEEITYLDKL  480
ETECREQLSS LQRDAEMKEA KMMELWAAKH LQLTKFVEQM LYQFPDAQRL FSKEMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-15792789MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-15792789C-Myb DNA-Binding Domain
1msf_C4e-15792789C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452457RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.15960.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075224.11e-79protein rough sheath 2 homolog
RefseqXP_027178645.11e-79protein rough sheath 2 homolog
SwissprotQ9S7B21e-68RS2_MAIZE; Protein rough sheath 2
TrEMBLD5ABT40.0D5ABT4_PICSI; Uncharacterized protein
STRINGXP_009784773.11e-77(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-63MYB family protein