PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002036
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 526aa    MW: 58581.1 Da    PI: 6.1211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675981PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-2118PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
        Pgl002036 14 KGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding461.2e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+ l++++++ lG++ W+ Ia +++ gRt++++k+ w++
        Pgl002036  67 RGTFSPQEENLIIELHAVLGNR-WSQIATHLP-GRTDNEIKNLWNS 110
                      899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.531961IPR017930Myb domain
SuperFamilySSF466891.8E-2912108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
CDDcd001677.30E-121761No hitNo description
PROSITE profilePS5129425.47962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2565116IPR009057Homeodomain-like
SMARTSM007173.9E-1366114IPR001005SANT/Myb domain
PfamPF002491.2E-1367110IPR001005SANT/Myb domain
CDDcd001671.09E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLVRHIT KYGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SPQEENLIIE LHAVLGNRWS QIATHLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPSTHRPLS EVNAEAGDSK NDNSNKKIET QAVMDESHVS AGNEFKHPNA IPRAETANPK  180
FFHVPVEDNN LIASDSQAML HNGFINSNST TITATSTASA ANISLPKEFF LERFNSVNAT  240
PTSVEPGFNF INQTSCTQGF TAERDHKLID NPVLWVLQAP SRSVGFPTEN LMPWPGQVPA  300
KAVSDAFSDF SSDVCDYNSI MANPSMYRPG PCLSSLLYSE RSLDQDLLDN AGTNCMNGSA  360
VGSAQYWDNT ENNNVRTSSR SSSCNSSTAN LEVNNGAAFG HFWGFGERLD ATDITSENER  420
KAPLFLERAE TEYAVKWSEM LPPFSSHTQE ETLPMYITTD SKSQDLVSSD NINNHNQGAL  480
NSAIFPISWQ QLQNTEYPVL GDRTTMLSTP LSDPDFHRIA AVLDQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.2110.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF20.0A5JYF2_PICGL; R2R3-MYB transcription factor MYB8
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-86myb domain protein 55
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]