PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl002084

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

SRS

Protein Properties

Length: 519aa MW: 57064.8 Da PI: 6.5128

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55335364	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-18454	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.1	2.4e-08	136	170	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C +CGn a+ C ++ C+ CC C+ hv Pgl002084 136 KPKCSECGNVARSRCPFQACKSCCVKARNPCHIHV 170 568*******************99999***9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.1E-6	138	183	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MEGVTTSDTK DASTPCPSPS TTSAPASAVP ATLPKPQLSK QMEGIIISDT KDTSTPCLSP 60 STASAPASAV AATLPKPQRP PPSNLPSEGM VSPQTNTPLI GANATTPSPS TTNNTARNNH 120 NSASAEAPKS LRGLNKPKCS ECGNVARSRC PFQACKSCCV KARNPCHIHV LKQNASYPEK 180 VPSQSSPLFD QQRTNALSNK FPPSGSSRPY STPVLHHTHP YMSGSLSQSR VKRPLSRKEI 240 AAINNWRFVK LKEYCDSKIE AEDEAFGRYM QNVSLLEDVF SLPTRPLEGL SEDGNVTFES 300 RLSEQANSVS EDYNDDMLVE GLKVRLKSNT ERSEEHRQRL RKLIEKGLQK LKRGDHGNLV 360 EDDENNSALI LGDCAEVKKL KAIGRERLKK VSLISTLLDK LSKARNQEDV NACIEMYSHT 420 FGMDISGSAI NTNISEEIHS SQGQECMPDS NPSENESTPM EWVGEDRSSE RNGLFDGQQM 480 QFFSNPEIYI KGWTEINISE ERSQYIYENL LSMKDIAEL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MEGVTTSDTK DASTPCPSPS TTSAPASAVP ATLPKPQLSK QMEGIIISDT KDTSTPCLSP  60
STASAPASAV AATLPKPQRP PPSNLPSEGM VSPQTNTPLI GANATTPSPS TTNNTARNNH  120
NSASAEAPKS LRGLNKPKCS ECGNVARSRC PFQACKSCCV KARNPCHIHV LKQNASYPEK  180
VPSQSSPLFD QQRTNALSNK FPPSGSSRPY STPVLHHTHP YMSGSLSQSR VKRPLSRKEI  240
AAINNWRFVK LKEYCDSKIE AEDEAFGRYM QNVSLLEDVF SLPTRPLEGL SEDGNVTFES  300
RLSEQANSVS EDYNDDMLVE GLKVRLKSNT ERSEEHRQRL RKLIEKGLQK LKRGDHGNLV  360
EDDENNSALI LGDCAEVKKL KAIGRERLKK VSLISTLLDK LSKARNQEDV NACIEMYSHT  420
FGMDISGSAI NTNISEEIHS SQGQECMPDS NPSENESTPM EWVGEDRSSE RNGLFDGQQM  480
QFFSNPEIYI KGWTEINISE ERSQYIYENL LSMKDIAEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.21444	0.0	stem\| vegetative bud

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-63