PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002152
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 509aa    MW: 56440.1 Da    PI: 5.6875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675985PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-39278PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-154087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++  + G g+W+ +a+  g+ R++k+c++rw +yl
        Pgl002152 40 KGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYL 87
                     678*******************************************97 PP
2Myb_DNA-binding506.7e-1693136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++
        Pgl002152  93 RGAFSPQEEQLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 136
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-243490IPR009057Homeodomain-like
PROSITE profilePS5129418.4473587IPR017930Myb domain
SuperFamilySSF466897.81E-2937134IPR009057Homeodomain-like
SMARTSM007171.8E-123989IPR001005SANT/Myb domain
PfamPF002494.7E-154087IPR001005SANT/Myb domain
CDDcd001671.31E-104387No hitNo description
PROSITE profilePS5129426.05388142IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2691143IPR009057Homeodomain-like
SMARTSM007172.8E-1592140IPR001005SANT/Myb domain
PfamPF002497.4E-1593136IPR001005SANT/Myb domain
CDDcd001673.51E-1195135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
XLVSALKXLT EHGHSIHSRL KMSCTTGGLP SPISKPKLRK GLWSPEEDDK LINYMMKNGQ  60
GCWSDVAKQA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EQLIIHLHSI LGNRWSQIAA  120
RLPGRTDNEI KNFWNSCIKK KLKHLSASNN NSKSICASNR TNTMNSSMTP FSESSAQPLE  180
VMPTRYQPPN AFNHEVPTAE NQFCIPDVLA LRHEQVQNQN QFSIDQDSAT NNLISQLWNS  240
NSISLSTHES FSHAFMSPSL QAQGHAIKTP IKPCDQISWS TPLTREAAGS HDCNYSLGCS  300
IPALVESESL KDKFKNDAGD QINENEIIYS STASSVITAW STNSYSDAEY CTVDPHDQVG  360
SILEDYVSHE KTTDQPCPPL NSSLQFGAPA IRWTADQSND EEYDCKDRLN LRYDVNLAYP  420
NSTNDKQNGY QLPQIGGGVN GDQWDCARIP NMEEANSTTP TSTILGGSGQ FEFECDGDAG  480
GQVTAWAHDV MYNDIHTAAS DLLGQIYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28361423108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.24200.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB1PPT60.0B1PPT6_PINPS; R2R3-Myb4 transcription factor (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.18e-66myb domain protein 46