PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002261
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 495aa    MW: 55363.4 Da    PI: 6.779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341684PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40018PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-133887148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+ ++    +   +W+++a+  g+ R++k+c++rw +yl
        Pgl002261 38 KGLWSPEEDEKLIAYIMNNRMLdcSWASVAKQAGLQRCGKSCRLRWINYL 87
                     678***************99999*************************97 PP
2Myb_DNA-binding445e-1493135145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++  E+ l+ ++   +G++ W+ Ia++m+ gRt++++k++w+
        Pgl002261  93 RGAFSRHEERLIMNLQSIMGNR-WSQIAAHMP-GRTDNEIKNYWN 135
                      899*******************.*********.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8553387IPR017930Myb domain
SuperFamilySSF466895.47E-2535134IPR009057Homeodomain-like
SMARTSM007179.2E-83789IPR001005SANT/Myb domain
PfamPF002492.8E-123887IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-193994IPR009057Homeodomain-like
CDDcd001677.99E-84187No hitNo description
PROSITE profilePS5129423.36488142IPR017930Myb domain
SMARTSM007171.4E-1392140IPR001005SANT/Myb domain
PfamPF002499.0E-1293136IPR001005SANT/Myb domain
CDDcd001676.67E-1095135No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2495143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
XNSLRGTTSV VTMRCRQGEG EEVREGLTQP FSKPKLRKGL WSPEEDEKLI AYIMNNRMLD  60
CSWASVAKQA GLQRCGKSCR LRWINYLRPG LKRGAFSRHE ERLIMNLQSI MGNRWSQIAA  120
HMPGRTDNEI KNYWNSAIKK KLKLKHNLSS STTNCKTDAK SNIPDRSHRI SHTNSAFPHA  180
YDAPASLSSA QPYSNAMPEG YQTPKNTFNV LTNGENQLCV PGVLELKQEQ VQDQNDEIKQ  240
LISYFEILND TATHTNDSVS SHADFISPSQ QAKVLTESCK TTIPPLEGPD SADYSLGSTG  300
ITIPAVSERD CLKKQYENDR WRTSHCCSNA NDGFHVADPE AYTVHKAEEY KSLYEKTTHQ  360
ASPPLSFRSQ FAGPAIKWPP GQSNEFQSEN DCRDDLNLRN DVNLGIPKYV DIYCRKNNYQ  420
LPHIDGGVGN QWNFSTIPHE ETDANPIPTI LAGGGSGLFQ IECEAGAGQV TGWAHDGIYN  480
LNTSAISDFD QIYFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24341423108B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.151240.0needle
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-48myb domain protein 55