PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002387
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 481aa    MW: 53738.7 Da    PI: 5.7258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334668PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-48274PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
        Pgl002387 14 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.58.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
        Pgl002387  67 RGNFSLKEEQTIIHLHQVLGNR-WSAIASHLP-GRTDNEIKNVWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.309965IPR017930Myb domain
SuperFamilySSF466893.67E-3110108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002497.5E-171461IPR001005SANT/Myb domain
CDDcd001671.33E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129418.32166116IPR017930Myb domain
SMARTSM007172.4E-1366114IPR001005SANT/Myb domain
PfamPF002499.5E-1467112IPR001005SANT/Myb domain
CDDcd001671.21E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGRAPRCDEM GLKKGPWTPE EDQILISYIN KHGHGNWRAL PKQAGLMRCG KSCRLRWTNY  60
LRPDIKRGNF SLKEEQTIIH LHQVLGNRWS AIASHLPGRT DNEIKNVWNT HLKKRLLQIG  120
VDPVTHAPRG YNVSSCYAAV SIRDHHGEQA DHHLQSHGCT SESVKKVFRK EGNSIEALAR  180
QPLQETKALQ DEGASNNSPL IQKTPDDQNM MNSEQHESYY SLNSSGNNYT YSSDSSRVLS  240
TKPMELVSAS AFGLCSGMDK EQNNSEKLAA VMPFDYSKTG EKKMLAVDYT SFVQSSYTDS  300
LKFILGDDGE DSNSSEYQVN WKPSAGNQQN FVSLGCGEFQ DDDKAVVQQA DPEGSLAYDS  360
SMLNSNVEFW RHELSLWPAT ENNTLGEQVL AYSSSNGAAA AVSGQQKKVK LEPSGTNFSV  420
EQFLELADHS MGTNMEGKSN IYDRWPDMNL ADQDQGMEYW VNLLRQVGPL PFLETISPPD  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.157510.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.16e-76myb domain protein 107