PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002456
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 473aa    MW: 53739.2 Da    PI: 9.5381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675986PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-20177PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-1558103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+ ++rw++ 
        Pgl002456  58 RGHWRPSEDEKLRELVEQYGPQNWNSIAEKLQ-GRSGKSYRLRWFNQ 103
                      899*****************************.***********996 PP
2Myb_DNA-binding58.81.2e-18110153146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Pgl002456 110 RRPFTEEEEERLLAAHRLHGNK-WAMIARLFP-GRTDNAVKNHWHV 153
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.43853104IPR017930Myb domain
SMARTSM007171.5E-1157106IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-2757151IPR009057Homeodomain-like
PfamPF002492.1E-1458103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2559111IPR009057Homeodomain-like
CDDcd001671.11E-1161102No hitNo description
PROSITE profilePS5129427.061105159IPR017930Myb domain
SMARTSM007179.2E-16109157IPR001005SANT/Myb domain
PfamPF002494.8E-15110152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21112158IPR009057Homeodomain-like
CDDcd001673.35E-7121152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
EFRAFTSLCA QTKLRIDSRW GDFEIANRMT EPVHHEEIKT DRHSDVKDES SQAKMCPRGH  60
WRPSEDEKLR ELVEQYGPQN WNSIAEKLQG RSGKSYRLRW FNQLDPRINR RPFTEEEEER  120
LLAAHRLHGN KWAMIARLFP GRTDNAVKNH WHVIMARKFR ERSRIYGKRR SSCGHLMRKA  180
RPHSAHAPEH IEENSLSTFI DMYYRGCHED AGISSSNILG RRPRKLPHDS TLENMNSQIH  240
GNGLILNPSG RSEGLEVVTP QGRPASTESE AYKNRILDSL CEIGINNQFN QGKTYRIFFF  300
QQSMRPAASK VPSATSWLPI FSGSTLPKAP DLAQGEFRPD HFPCPEPGKI NGCLKIPPIY  360
NYSSSSFRHR TTDHRGPGAV AEAKEAQLIS PELLKGSTAS SYSPASLQLS INPQSSPSST  420
FKEAKLVHQN KSHNGRDRNP YNILESQVAD HEITDPDQRK EAAFIDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29581587107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ27IN90.0Q27IN9_PINTA; R2R3-MYB transcription factor MYB3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-54myb domain protein 105