PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002458
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 473aa    MW: 52404 Da    PI: 4.6332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333463PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-27845PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21173223155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGVr+++ +g+W+AeIrdps+     r +lg+++taeeAa+a+++a++k++g
  Pgl002458 173 SKYKGVRQRR-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAAQAYDKAARKING 223
                89*****998.**********965...4************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-22173232IPR016177DNA-binding domain
PfamPF008477.8E-14173223IPR001471AP2/ERF domain
CDDcd000181.97E-33173230No hitNo description
Gene3DG3DSA:3.30.730.101.3E-30174232IPR001471AP2/ERF domain
PROSITE profilePS5103223.433174231IPR001471AP2/ERF domain
SMARTSM003801.5E-36174237IPR001471AP2/ERF domain
PRINTSPR003675.4E-10175186IPR001471AP2/ERF domain
PRINTSPR003675.4E-10197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MPGPQISPQS LCTTTALKTS KKMRGQNKVN KQYDTDNGRV QRPFAALTRT VRVICTDPDA  60
TDSSSDEEAV RFEPKRVVRE IHIPADCSPS VSDSEDEYQL PICSSLSFSQ FEEESKDTWQ  120
EFYAPHEKKP KKKNKGKKVS RKQRTVLRAF ERVKSGRVSK SSPAPRSFAD KTSKYKGVRQ  180
RRWGKWAAEI RDPSKGVRLW LGTYDTAEEA AQAYDKAARK INGPSAPTNF SSSCTSYTAQ  240
KNPSRAAKSQ TYDNQWIAAH SVMTRSSANA KMKTITIESY MTSSSASLSC ISEEGSEEGS  300
DEDWIPVSSL ASAPTVSTSY SLIDDVGSED ASCSLMIEHS TSCSTSSDFL ADCLEDNGHQ  360
GSNNEFLQKL GGSNLLLDDT LDLIEQLHTE NEDNPLVDFL IPPINEQCCN ELELTYPDSY  420
FLEEFGQVFD MGDGGPKDLV SLPDSLEGLL DEENTMSSLN FDLDAEAMSW MNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18175230359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KKPKKKNKGKKVSRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.15580.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RXU01e-156A0A0C9RXU0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5206_2819 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-17cytokinin response factor 2