PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl002501

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 468aa MW: 51232.3 Da PI: 7.7033

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55349458	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-31730	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.1	9.4e-98	93	463	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevsPilkf 93 ve+Ll++Aeav+ g l aqa+Larl+++ sp g+p++R+a+yf+eALa+r+++++++ + +++ t + + ++++++a+k fse+sP+ +f Pgl002501 93 VEQLLKAAEAVELGTLDHAQAILARLNQHLSPLGKPLHRAAFYFKEALASRILNTTNTGGDNRNATGTGTGSstisspldMVHKISAYKSFSEASPLAQF 192 799*************************************************7777666665555443334677888899************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +h+taNqa+lea+eg+e++HiiDf+i+ G+QW+++lq+La + +g+p++R+T++gs +++s+ el+ t+++L +fA++l+vpfef++l + ++e+ Pgl002501 193 AHFTANQALLEALEGAEAIHIIDFEIGLGGQWASFLQELAVKLGGAPHVRLTALGS-SASSSLELHLTRDNLCNFAKQLNVPFEFELL-----HLDHIES 286 ****************************************************.6679*********************97.....4556699 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFlerflealeyysalfdsleaklpreseer 282 L ++++Ea+aVnl+l ++ ++ s ++++++l+k+l P+ +vvv+ e+ +++ sF+++fleal++ys lfdsl+a + ++ Pgl002501 287 LTLREREAVAVNLSLLPSTFT-SPDS----IPRLIRLIKNLAPRAIVVVDAETTATAAaaasaattsaaSFVHHFLEALQFYSFLFDSLDAV-NITMDAV 380 9**********444443.4444....556***************77765567788888888****************776.5799* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+E++ll+++i ++ + a W+ + +aGF+pv++s+++++qa++l+++ +++g++v + + +l+lgW++rpLvs++aWr Pgl002501 381 HKIEKFLLAPKIDATISSAAAP---------PWKTLFAAAGFSPVAFSNFTETQAEYLIQRLHGRGFEVLKAHTALLLGWQGRPLVSATAWR 463 **************998886.........9*********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.447	66	443	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-95	93	463	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
XPPSRPPKRF GLEHQLWQQT FKQQEYMNMM KPQHQQELLQ SLHRRQQFLH QPLPPPPPHH 60 HQQHHQLRQK AIVNNTFKVG GPGAAAEEVQ VIVEQLLKAA EAVELGTLDH AQAILARLNQ 120 HLSPLGKPLH RAAFYFKEAL ASRILNTTNT GGDNRNATGT GTGSSTISSP LDMVHKISAY 180 KSFSEASPLA QFAHFTANQA LLEALEGAEA IHIIDFEIGL GGQWASFLQE LAVKLGGAPH 240 VRLTALGSSA SSSLELHLTR DNLCNFAKQL NVPFEFELLH LDHIESLTLR EREAVAVNLS 300 LLPSTFTSPD SIPRLIRLIK NLAPRAIVVV DAETTATAAA AASAATTSAA SFVHHFLEAL 360 QFYSFLFDSL DAVNITMDAV HKIEKFLLAP KIDATISSAA APPWKTLFAA AGFSPVAFSN 420 FTETQAEYLI QRLHGRGFEV LKAHTALLLG WQGRPLVSAT AWRCGPPP

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

XPPSRPPKRF GLEHQLWQQT FKQQEYMNMM KPQHQQELLQ SLHRRQQFLH QPLPPPPPHH  60
HQQHHQLRQK AIVNNTFKVG GPGAAAEEVQ VIVEQLLKAA EAVELGTLDH AQAILARLNQ  120
HLSPLGKPLH RAAFYFKEAL ASRILNTTNT GGDNRNATGT GTGSSTISSP LDMVHKISAY  180
KSFSEASPLA QFAHFTANQA LLEALEGAEA IHIIDFEIGL GGQWASFLQE LAVKLGGAPH  240
VRLTALGSSA SSSLELHLTR DNLCNFAKQL NVPFEFELLH LDHIESLTLR EREAVAVNLS  300
LLPSTFTSPD SIPRLIRLIK NLAPRAIVVV DAETTATAAA AASAATTSAA SFVHHFLEAL  360
QFYSFLFDSL DAVNITMDAV HKIEKFLLAP KIDATISSAA APPWKTLFAA AGFSPVAFSN  420
FTETQAEYLI QRLHGRGFEV LKAHTALLLG WQGRPLVSAT AWRCGPPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-51	98	462	24	377	Protein SCARECROW
5b3h_D	1e-51	98	462	24	377	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.5807	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258971.1	1e-117	PREDICTED: scarecrow-like protein 6
TrEMBL	T1PZF3	0.0	T1PZF3_9SPER; Scarecrow-like 6
STRING	XP_010258971.1	1e-117	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	4e-79	GRAS family protein