PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002581
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 460aa    MW: 51946.5 Da    PI: 5.6749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675987PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10847PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ede+l+++++++G g+W+ ++++ g+ R++k+c++rw +yl
        Pgl002581 26 RGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWINYL 73
                     788*******************************************97 PP
2Myb_DNA-binding50.83.9e-1679123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ E++l+++++++ G++ W+ Ia++++ gRt++++k++w+++
        Pgl002581  79 RGNFSPNEEKLIIHLHTMVGNR-WAYIASHLP-GRTDNEIKNYWNSW 123
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-251876IPR009057Homeodomain-like
PROSITE profilePS5129423.882177IPR017930Myb domain
SuperFamilySSF466892.28E-2923120IPR009057Homeodomain-like
SMARTSM007175.2E-122575IPR001005SANT/Myb domain
PfamPF002493.2E-142673IPR001005SANT/Myb domain
CDDcd001676.27E-112973No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2477128IPR009057Homeodomain-like
PROSITE profilePS5129418.39978128IPR017930Myb domain
SMARTSM007173.1E-1378126IPR001005SANT/Myb domain
PfamPF002498.2E-1479123IPR001005SANT/Myb domain
CDDcd001672.75E-981124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
INFQGGFAFD ISMGRHLCCN QQKVKRGLWS PDEDEKLINY ITKYGYGCWS EVPEKSGLQR  60
CGKSCRLRWI NYLRPDIRRG NFSPNEEKLI IHLHTMVGNR WAYIASHLPG RTDNEIKNYW  120
NSWIKKKLAK AEIISKNIEA SKVHNNLPQF LFEQSATRDN DCKLLKTEMT TDGHAAPLSH  180
VLPSKENSET FPLWDYKMIN PSTTRNSLYG IEESKAALTF DSLLIRTDSE TGAIKELNTW  240
DPSGILINSS SKNCKNSDLQ YALQRDNGLQ VQGLPASSTW HGYSSLNPIE SSFCYNPNSE  300
NSNGLHSTSS MNESDFMRSM DMAPLIYSQH ETLDLADHAN VAKCGHPVPA XNGVDLGYSE  360
CLYSAEQYNH GTENSCSYLP PLYDASEESA AINIKHNENN SLRYLEQIQS NEINIAQEMD  420
AIQQIFECGE QNSNLVTTIQ YCLGSHSPVS DSHHPQDTFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26261287108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE60.0A5JYE6_PICGL; R2R3-MYB transcription factor MYB2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.17e-74myb domain protein 103
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]