PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002672
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family G2-like
Protein Properties Length: 452aa    MW: 50118.1 Da    PI: 6.8903
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344317PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10825PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27180232356
    G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                +++Wt +LH+rFv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQkYR++
  Pgl002672 180 KVEWTMDLHRRFVQAVEQL-GVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSH 232
                899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.008175234IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26176235IPR009057Homeodomain-like
SuperFamilySSF466897.17E-17176235IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-25178232IPR006447Myb domain, plants
PfamPF002491.6E-6180230IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
PSEEDKTLRL DDATNLMVGT AHADNNCGYE TIREVRLDAE ATSAWSSQVD SPASVKKEIQ  60
DMYRISLKAR NNSQSGLKPV DITSDQLGSG ITSRGTSLHS RLETVDVHVV NASGIAEEEV  120
GSAEGSKSDD ENIEKEAILS SYACNEENVD SSTEDIKGKK NSAEHGCKKS NIVSSKKKFK  180
VEWTMDLHRR FVQAVEQLGV DQAIPSRILD LMKVDGLTRH NVASHLQKYR SHRRHILPRE  240
DDVASRRYWQ HFDPAWTRTK YDESWTRKGN PASGPILAYS PVQLHPAPHG TPVGPPLHVW  300
GHPTIDQSGS HMWQQLHVGT PTPWQAQDGS FWKHPGVCAD AWGCPTVGMP FYPQPMMKLP  360
ANHGHRSNPN STIQGVSVQH TPIPDPLNNN GSSLWEKYIN GHPPKEVIDE AFKEALKNPW  420
TPLPLGLKPP LMESVMAELQ RQGISKIPPP SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16174230157ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.22080.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388769.13e-68transcription activator GLK1-like
TrEMBLA0A176WS142e-92A0A176WS14_MARPO; Uncharacterized protein
TrEMBLA0A2R6W4C32e-92A0A2R6W4C3_MARPO; Uncharacterized protein
STRINGPP1S31_317V6.11e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-43GBF's pro-rich region-interacting factor 1