PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002697
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 450aa    MW: 52287 Da    PI: 7.2077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335058PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13758PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81.1e-2195174286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+ e+l+Li++r+e+e r++r+ +k+ lW+e++  +r+++f r ++qC++kwe+l   +k ++eg k+r  ++    py+d+l+
  Pgl002697  95 WTRVETLKLIKLRTELEPRFSRSGRKMELWDEIAVSLRKEQFFRDAQQCRDKWEKLMAGFKDVREGLKDR--ND---NPYYDDLH 174
                ********************************************************************97..34...48999986 PP
2trihelix62.87.9e-20353431285
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                W++ evl+Li++r em+ r+ ++++k++lWee ++ + ++g++r  kqC+ekw++l   yk + +g++++  ++    +yf +l
  Pgl002697 353 WKRGEVLQLIKLRGEMDGRFANSARKAALWEELAEMLGRQGIKRDGKQCREKWDKLIAAYKDVMDGKREE--GD---LSYFVEL 431
                *****************************************************************99984..33...4566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.03787151IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-490151IPR009057Homeodomain-like
SMARTSM007171.3E-491153IPR001005SANT/Myb domain
CDDcd122038.56E-2393158No hitNo description
PfamPF138375.0E-1693175No hitNo description
PROSITE profilePS500908.293345409IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4346409IPR009057Homeodomain-like
SMARTSM007170.014349411IPR001005SANT/Myb domain
CDDcd122036.12E-21351415No hitNo description
PfamPF138379.5E-16351433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEEPLQIINP SPTQQQHEHE HEHDHDDHGH EEEVIPHALL PPPGDTCIVP YIMPVSTSTA  60
EKHPPQQTNI AFNGPETEED DKKRDREHKK RSKNWTRVET LKLIKLRTEL EPRFSRSGRK  120
MELWDEIAVS LRKEQFFRDA QQCRDKWEKL MAGFKDVREG LKDRNDNPYY DDLHPLLSGK  180
CLRRENLKKE GDSAHNENLN SRHLDISGRE MYENRDTDED DDDLLLERPY FKKRKRCSKY  240
VPVTDIEAAK TLLEAVITRQ QRFFKELLDS LERKEQIREQ LRQEREEKWR VEERAHRNVF  300
NNAMILLAQK LLGERGAVAA AETAMGNSSG GGVVSACDTL RQGSGPKKRS KNWKRGEVLQ  360
LIKLRGEMDG RFANSARKAA LWEELAEMLG RQGIKRDGKQ CREKWDKLIA AYKDVMDGKR  420
EEGDLSYFVE LRAIVGGRPD GVKVQTELIP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.258320.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-139trihelix transcription factor GTL1-like
TrEMBLA0A0D6QU720.0A0A0D6QU72_ARACU; Uncharacterized protein
STRINGPP1S224_109V6.11e-138(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.19e-14Trihelix family protein