PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl002865

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 436aa MW: 48432.1 Da PI: 6.7201

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55342528	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-43331	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.9e-31	76	130	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LHerFv+av+qLGG+++AtPk +l++m+++ Lt+++vkSHLQk+Rl Pgl002865 76 KQRLRWTPDLHERFVNAVTQLGGADRATPKGVLRMMGIQWLTIYQVKSHLQKFRL 130 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.895	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-16	74	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-30	75	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-24	76	131	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-8	78	128	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-21	162	208	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
KKRIFSYKIL GFGNNKEPPA YLLSEYDLLS TCSLFKMYHG KNISTSHSHE QDISSGALVG 60 ANDALNSLST SAMASKQRLR WTPDLHERFV NAVTQLGGAD RATPKGVLRM MGIQWLTIYQ 120 VKSHLQKFRL ARYIPGSMDD GQNTGRKETT GILSNLDARS GIQITDALKM QMEVQTRLHE 180 QLEVQRQLQQ RIEAQGKYFQ KILEEQQRLG GVLKDSANSV DCISIISGEQ SAQDSDVKLD 240 LTAHPTQATS QDVSGAGRAC NKLENLLHDN ASDDESKSFS SQQNPSSNSL SSELSLPLES 300 TNPAEPPLKK LRLEKPSSSE LHICNQSDQK HMNRLSLDQT AEVKCDPDVD GQTSVFTRHE 360 CQPGHSGSSV EQRQLLFSIQ DSHISLNVQP SNSATNLSSL PEPQPQLDEE LPKFLHLHET 420 PSARTSYSLM KRSDIH

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

KKRIFSYKIL GFGNNKEPPA YLLSEYDLLS TCSLFKMYHG KNISTSHSHE QDISSGALVG  60
ANDALNSLST SAMASKQRLR WTPDLHERFV NAVTQLGGAD RATPKGVLRM MGIQWLTIYQ  120
VKSHLQKFRL ARYIPGSMDD GQNTGRKETT GILSNLDARS GIQITDALKM QMEVQTRLHE  180
QLEVQRQLQQ RIEAQGKYFQ KILEEQQRLG GVLKDSANSV DCISIISGEQ SAQDSDVKLD  240
LTAHPTQATS QDVSGAGRAC NKLENLLHDN ASDDESKSFS SQQNPSSNSL SSELSLPLES  300
TNPAEPPLKK LRLEKPSSSE LHICNQSDQK HMNRLSLDQT AEVKCDPDVD GQTSVFTRHE  360
CQPGHSGSSV EQRQLLFSIQ DSHISLNVQP SNSATNLSSL PEPQPQLDEE LPKFLHLHET  420
PSARTSYSLM KRSDIH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	76	133	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.8349	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901105.1	1e-74	myb family transcription factor PHL7
TrEMBL	B8LMR6	0.0	B8LMR6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-56	G2-like family protein