PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002965
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 427aa    MW: 47348.8 Da    PI: 6.5017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55343083PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19695PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+  ++q+G+g +W + +++ g++R++k+c++rw++yl
        Pgl002965 14 KGPWSPEEDAKLKAFIEQHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding33.51e-1070111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        Pgl002965  70 GFSEDEDSIICGLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.714966IPR017930Myb domain
SuperFamilySSF466893.56E-2611109IPR009057Homeodomain-like
SMARTSM007172.1E-121364IPR001005SANT/Myb domain
PfamPF002498.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-231569IPR009057Homeodomain-like
CDDcd001672.10E-91662No hitNo description
PROSITE profilePS5129415.50367117IPR017930Myb domain
SMARTSM007177.1E-967115IPR001005SANT/Myb domain
PfamPF002491.9E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAFIE QHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FSEDEDSIIC GLYASIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLPGK  120
RKEQQTRRFK EAKSMGNGAG PYVSEGMSAA SSTINAIRSL MSNTEALYLS DRMPHMDMDP  180
SLGLLNPQFL QHTVSNIANY CSSSEHVSFG TGSSPGLDQE LTFDNASLRK LLFRTECAFT  240
ADNNNNTSQA SPAIISSQIY SPSTILDPGL VQDSFEKSCM NINVKEEPVA GALDHHHIDY  300
LASMTLRDSC SSTEGNYIQS PWLYQNGLQD HSCLSYEFPM EQLNEGLYWN SASSSLQGHH  360
EKEELCAYSS YKESARHADE PTTTFWGAQL PCNYPKPMSD CPNYFSVAPS DANQQGSSRS  420
QEAGIIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362138.13e-81transcription factor RAX3-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-78myb domain protein 68