PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl003072

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 420aa MW: 47105.4 Da PI: 7.7772

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55339653	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-20014	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pgl003072 37 KQRLRWTTDLHDRFVEAVTQLGGADRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.407	34	94	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-32	35	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	36	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-25	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	39	90	IPR001005	SANT/Myb domain
Pfam	PF14379	9.9E-20	122	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MTPQRVQGHQ QRGSGPSDVS SNSDGSPVTA CGGGSAKQRL RWTTDLHDRF VEAVTQLGGA 60 DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYVPEFRE GEKSDKRKVY EAIPKMDATS 120 GIQITKALEM QMEVQKRLYE QLEVQRQLKL RIEAQGRYLE KIIEEHQTGA TKCQAPSSPE 180 SSSHFSEELH GNTKRVLHDS EDQGQDDSQL PTSRSSGAMA MTSSNISHKD EHPIISSPAM 240 DKQQKIPLFT YNGYDHVPCL ANPEFRSPSK RIRVNDSIGQ VKQETFAGQS QDQQQLPTNE 300 YQKHLSVPKT RELSTPNYRS RLACSTGHVE SPRSVHLSSE SQPQHSEGGR YSEEVYQKQS 360 AAKTSDALEI APTESQYHIP TYLQSMNSPY LSQSEFSSAL DSMDSHQNMP LQARLFQSWM

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MTPQRVQGHQ QRGSGPSDVS SNSDGSPVTA CGGGSAKQRL RWTTDLHDRF VEAVTQLGGA  60
DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYVPEFRE GEKSDKRKVY EAIPKMDATS  120
GIQITKALEM QMEVQKRLYE QLEVQRQLKL RIEAQGRYLE KIIEEHQTGA TKCQAPSSPE  180
SSSHFSEELH GNTKRVLHDS EDQGQDDSQL PTSRSSGAMA MTSSNISHKD EHPIISSPAM  240
DKQQKIPLFT YNGYDHVPCL ANPEFRSPSK RIRVNDSIGQ VKQETFAGQS QDQQQLPTNE  300
YQKHLSVPKT RELSTPNYRS RLACSTGHVE SPRSVHLSSE SQPQHSEGGR YSEEVYQKQS  360
AAKTSDALEI APTESQYHIP TYLQSMNSPY LSQSEFSSAL DSMDSHQNMP LQARLFQSWM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-22	36	94	1	59	Protein PHOSPHATE STARVATION RESPONSE 1

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.25563	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360639.1	2e-71	protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A2K1KZM9	6e-70	A0A2K1KZM9_PHYPA; Uncharacterized protein
STRING	PP1S226_24V6.1	1e-70	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-65	G2-like family protein