PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003096
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 418aa    MW: 48415.1 Da    PI: 8.3651
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348047PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-22009PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.17.1e-111089286
   trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
               W+++ v aL++  +++  +  rg+l k++W+++++++    g   +  qCk kw  l+k y k+k++++       s++++f+++e
  Pgl003096 10 WPNSAVDALLRKFEDLCFNKHRGQLGKKHWDRIAAAVnVICGTDYTGMQCKYKWHRLKKMYNKEKQRNEP------SKWAFFRHVE 89
               *************************************55679999***********************97......5899*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-13990No hitNo description
PfamPF031628.1E-60250402IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019111.6E-26250267IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
SuperFamilySSF527992.45E-36250395IPR029021Protein-tyrosine phosphatase-like
Gene3DG3DSA:3.90.190.103.4E-33252396IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019111.6E-26287300IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.6E-26306320IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.6E-26323337IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PROSITE patternPS003830345355IPR016130Protein-tyrosine phosphatase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016311Biological Processdephosphorylation
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
XTKVQKEELW PNSAVDALLR KFEDLCFNKH RGQLGKKHWD RIAAAVNVIC GTDYTGMQCK  60
YKWHRLKKMY NKEKQRNEPS KWAFFRHVEH IVQKSSKSPA IQNDLQNDLQ NDLQNDSNEE  120
ECPNDVDTTC DAASNESNHE EPSIQTKSAS PLNAIRDEEK RPKKKRVPLK SFGQRMERSM  180
THLANTVSNI EKTRTAEIKK LLDTQLQIAS MMVQGMRELK QGVGMIGCND LAVSQREFVP  240
QQQEGCNERY VPPSNFAMVD KRVYRSGFPN NKNFPFLETL QLNSIICLCP EPYPEANLEF  300
LRTHGIRLFH IGMERYKDPF VDVPDDTIRE ALKVLLDTRN HPVLIHCKKG KRRTSCLVGC  360
LRKIQNWCLA TVFEEYQRFA GMKSEVLDLQ FIEQFDVSFV KEYGYSLMHP HASEVVIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A9e-702513983150At1g05000
1xri_B9e-702513983150At1g05000
2q47_A9e-702513983150Probable tyrosine-protein phosphatase At1g05000
2q47_B9e-702513983150Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.211520.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524286.11e-144uncharacterized protein LOC18995747 isoform X2
TrEMBLA0A0C9S3W70.0A0A0C9S3W7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_28300_3083 transcribed RNA sequence
STRINGERN083061e-143(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.15e-09Trihelix family protein