PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003117
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 416aa    MW: 46285 Da    PI: 9.7253
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339217PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19075PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-1767155186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ v +L++a+++++   +r+klk+++We+v+k++    +  + ++++ qCk+k+e+++kry+ ++++  +     ss++p+f +++
  Pgl003117  67 EWSEEAVCTLLDAYESKWLLRNRAKLKGNDWEDVAKQVstrsSGIKSHKTQSQCKNKIESMKKRYRSEAASICNPG-SGSSSWPFFARMD 155
                5*************************************99555555699*********************999864.55569******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.91E-6449No hitNo description
PfamPF138373.1E-2165156No hitNo description
CDDcd001670.0014867128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEKQQVGNQQ QQQHQQQQQQ HHQQQQAPLL RVQVPQQQAQ HQQLQQSYMK TGENGLSKTP  60
DRTKRDEWSE EAVCTLLDAY ESKWLLRNRA KLKGNDWEDV AKQVSTRSSG IKSHKTQSQC  120
KNKIESMKKR YRSEAASICN PGSGSSSWPF FARMDGLLRC STIPQARPGG VCVDTGGQPA  180
LTDLGMQALP KVEIGDSEMV YKRVQEIQPN PGEFIEGNLN HLAVVEAEGH MQDSNQEDGS  240
NTLPNRKESA ALDSDTSTPR SKVANVGEGS GKGHSSKRRK NSSSEVAESI RSFADSILKL  300
EQAKMEMYKD SERLRAETEV RRGEMELKRT EIIAKTQLQI ARLLSGKRGK RKLANKNSAL  360
KSALAATIAA PSDGPAAGMQ EEKHKVEGCR YSLSLNGRRA DLSLQDLSFC AIVQKF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.59900.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845516.21e-115trihelix transcription factor ASIL2
TrEMBLA0A0D6QSB60.0A0A0D6QSB6_ARACU; Uncharacterized protein
STRINGERN071911e-115(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-65sequence-specific DNA binding transcription factors