PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003137
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 415aa    MW: 46511.5 Da    PI: 6.5931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350330PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34976PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143786148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++++ + G    +W+ Ia+  g+ R++k+c++rw +yl
        Pgl003137 37 KGLWSPEEDEKLIKYILKKGLLgcSWSYIAKQSGLQRCGKSCRLRWINYL 86
                     678****************98799************************97 PP
2Myb_DNA-binding40.56.3e-1392135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l++++   lG++ W  Ia+ ++ gRt++++k++w++
        Pgl003137  92 RGAFSPQEERLIIHLQSVLGNR-WCQIAASLP-GRTDNEIKNYWNS 135
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2043286IPR017930Myb domain
SuperFamilySSF466893.91E-2635133IPR009057Homeodomain-like
SMARTSM007176.6E-83688IPR001005SANT/Myb domain
PfamPF002494.8E-123786IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-223893IPR009057Homeodomain-like
CDDcd001672.99E-84086No hitNo description
PROSITE profilePS5129422.99787141IPR017930Myb domain
SMARTSM007171.2E-1391139IPR001005SANT/Myb domain
PfamPF002499.5E-1292135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2394141IPR009057Homeodomain-like
CDDcd001674.55E-1094134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
HHSSFTEKSN WLAGTKMRCI QGQEQGVPFH SSQKLRKGLW SPEEDEKLIK YILKKGLLGC  60
SWSYIAKQSG LQRCGKSCRL RWINYLRPGL KRGAFSPQEE RLIIHLQSVL GNRWCQIAAS  120
LPGRTDNEIK NYWNSCIKKK LLKHSLSSSS TDANGNADSK SNMPSKFDST CNTNSVAAHL  180
PCGQDADTAL HSAEPLDVML EVYQQFLHNN VNQVTTAENQ HSWVPDSLEL KQEQAQEDQN  240
REFPIDGHPT NNQQIPYSQQ WIDSTFTHTG HVNFSHAFTS PSLQTQGHTH KTAKISTCDQ  300
LIESWTTLPP SATTTIPPLV EICDSGKNEN DGYIVNEDDI NVDYSSLTAY SSGITAWSAN  360
SPSYTTDFTD VYLGVLDTHT VAIDNLEDYT SQLHNKTAHQ SCPPLNSRSQ FFYGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26351415108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.780.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE89e-84A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.36e-46myb domain protein 55