PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003139
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 415aa    MW: 47546.6 Da    PI: 5.3679
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342732PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-3634PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.21.6e-11128187149
   trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkq 49 
                +Wt+++v++Li+++ +++e+   ++           +kk++W++vs++m+ rg+++sp+q
  Pgl003139 128 KWTDDMVRLLITVVLYVGEDGAPECtdgnkrksgmlQKKGKWKSVSRFMMNRGCSVSPQQ 187
                7********************987777788899999***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-7126189No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
XGMMELEGSL HHHQQQQQHH QHQQQQIAHQ NHHQQQIAHQ NHQQQLAHHH HLQVMGALPV  60
AHHAGIGLEN EQPLTMIESK GTPKNSMICS KGKPTTSEED EPSFTEDGTD SHLSGGKSKK  120
NSPWQRMKWT DDMVRLLITV VLYVGEDGAP ECTDGNKRKS GMLQKKGKWK SVSRFMMNRG  180
CSVSPQQLHM PLELDSQSCV QSSMVAKNRE GNESCGLMKE ENEDGEEDDE ENDDEDDEDD  240
ADGDDENEGD VEVEGMGDFG KRGRMGKSFE EGNYWVRPIS NECAKPNAPD NQNADMMGLV  300
QDTAKIPWEQ REWTKNRTLQ LQEQKVSLQA QAFELEKRRF KWQKICSKKD RELERLKLEN  360
ERMKLENERM ALQVKQKELE IEFKKSETSM TSVALVLERL QGRDQSELGR GQCLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347356KKDRELERLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.170400.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246931.11e-84PREDICTED: uncharacterized protein LOC104590097
RefseqXP_010246932.11e-84PREDICTED: uncharacterized protein LOC104590097
RefseqXP_010246933.11e-84PREDICTED: uncharacterized protein LOC104590097
STRINGXP_010246931.14e-84(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-25sequence-specific DNA binding transcription factors