PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003202
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 411aa    MW: 46478.3 Da    PI: 9.5708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339450PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-26456PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-092671148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k +  +w  y+
        Pgl003202 26 KGSLSEDEQRLVISLQAKYGNR-WKKIAAQVP-GTTAKRLSKWWEVYR 71
                     57789*****************.*********.*******99998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.263120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-7631IPR009057Homeodomain-like
SuperFamilySSF466893.89E-14677IPR009057Homeodomain-like
PROSITE profilePS5129419.6082175IPR017930Myb domain
SMARTSM007172.3E-72573IPR001005SANT/Myb domain
PfamPF002491.3E-72670IPR001005SANT/Myb domain
CDDcd001674.06E-53070No hitNo description
Gene3DG3DSA:1.10.10.604.3E-93270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNKALDRDPK SCAERWKNYL KPGIKKGSLS EDEQRLVISL QAKYGNRWKK IAAQVPGTTA  60
KRLSKWWEVY REKQDKIKDR KERIVADSAN TIEEGKYDHI LETFAEKYMQ KQKQLATSSS  120
CNLPTIAAMP SGLPPPISFS MPTNSTPDFI HFAIPSASTP TTCSFGAPIP CLPPWMSNRP  180
NSNSAHGSGT EAFLHSSSLS KSSPSSSSSP SVTLSLSPSS STPVMSANTA SACSSWMQDT  240
ARQSSENNVS GDSEAAKDKN RGNSHVQMPS MDPSKSAASH QAAADQGVIK QEISVFFQHC  300
RELEERQQSW SMHKKETGWR LKRLEQQLEA EKARKRREKM EEIESKVRAL REEEHLYLDR  360
LESDYRDQLS RIHRDAEIKE ARVMEMWTAK HVQLTKFFEQ MVHRHDPHKS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.19e-73MYB family protein