PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003217
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CAMTA
Protein Properties Length: 410aa    MW: 46218.9 Da    PI: 5.0696
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25736655PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43803PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.42.6e-44641802117
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                ++e + rwlk+ ei+ iL+n+++++l+++++++p+sgsl+Ly+ k +    +     +kkkdgkt+rE+he+LKvg+v++l+cyYah+e+np+fqrr+yw
  Pgl003217  64 VQEaQIRWLKPVEILFILQNYNNFKLSSDPPNKPQSGSLFLYDGKYFVSSERMVTIGRKKKDGKTIREAHERLKVGNVDALHCYYAHGEDNPNFQRRIYW 163
                566699***************************************999999999999******************************************* PP

       CG-1 101 lLeeelekivlvhylev 117
                +Le+++e+ivlvhy+ev
  Pgl003217 164 MLEQSYEHIVLVHYREV 180
                ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.03760186IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-5663181IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-3966179IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
XCQGVGVVGV EGVRASASRD FTLTLNLPDN GGYGKALRIS WRILIINGST MISTKEEFDF  60
TELVQEAQIR WLKPVEILFI LQNYNNFKLS SDPPNKPQSG SLFLYDGKYF VSSERMVTIG  120
RKKKDGKTIR EAHERLKVGN VDALHCYYAH GEDNPNFQRR IYWMLEQSYE HIVLVHYREV  180
TEGRFNSSSL PNFSKNGSLA VQTQHSALTQ VQNSSDATGS REIYSSSWIH SPGTLEEVSS  240
NLVVGNDELE SGDNINKNED CSNPVTHDGV SLTHQEIACL QQLRNQLNLE IDDSGYSEKD  300
ISSPWNASSM EMLQSNLSTS ENGFSNQEIL LSPLLGSKYQ GQDQHRRENV KNLKNLNIDI  360
LHQNPDAYFG QCCLHQQPRE ILETETNSPS WEEILELSTT SNRQNTNSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-48Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains