PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl003317

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 403aa MW: 45233.4 Da PI: 7.2248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333724	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-6212	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	235	281	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka ++ + ++Y++ Lq Pgl003317 235 HSFAERVRREKISERMKLLQDLVPGC----NKITGKAVMVDEIINYVQALQ 281 8899********************....899**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-15	228	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.20E-9	228	285	No hit	No description
PROSITE profile	PS50888	14.653	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-14	231	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-5	235	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-7	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
XRNSVIMALE GNRNYEFDGL TNYNKVSANS APNYETSSAS WHSAISGCAL NMNHQPSLQA 60 TAEGSFRPDN SSYSLDALLP FSVQVLDNVN RRTHLQNVKL VSEHSLQRNL FSPIREQQPE 120 IEQKYNASGE ECSSSEQSTG GRKRRILPND KARFQASTFT SPSEKNTENE SKRKRPKIAE 180 AKKENDDSKS DAEQGTHTGR PEVNPRQSGQ SVKPPEPPKD YIHVRARRGQ ATDRHSFAER 240 VRREKISERM KLLQDLVPGC NKITGKAVMV DEIINYVQAL QCQVEFLSMK LGAVNPKLDF 300 NMEGFLVKDM LEPSGMSLAS NTAMAYPQFH QPEWVGMQVG MSCEMEEQCM GNARQVALRR 360 IMNENCPLIE GCGDVKISNV WDDELQNVVR LGVGQNSTSF FHI

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

XRNSVIMALE GNRNYEFDGL TNYNKVSANS APNYETSSAS WHSAISGCAL NMNHQPSLQA  60
TAEGSFRPDN SSYSLDALLP FSVQVLDNVN RRTHLQNVKL VSEHSLQRNL FSPIREQQPE  120
IEQKYNASGE ECSSSEQSTG GRKRRILPND KARFQASTFT SPSEKNTENE SKRKRPKIAE  180
AKKENDDSKS DAEQGTHTGR PEVNPRQSGQ SVKPPEPPKD YIHVRARRGQ ATDRHSFAER  240
VRREKISERM KLLQDLVPGC NKITGKAVMV DEIINYVQAL QCQVEFLSMK LGAVNPKLDF  300
NMEGFLVKDM LEPSGMSLAS NTAMAYPQFH QPEWVGMQVG MSCEMEEQCM GNARQVALRR  360
IMNENCPLIE GCGDVKISNV WDDELQNVVR LGVGQNSTSF FHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	182	KRKRPKIAEAKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809650.1	7e-75	transcription factor bHLH78-like isoform X2
TrEMBL	D5AB87	0.0	D5AB87_PICSI; Uncharacterized protein
STRING	XP_008809649.1	1e-73	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	2e-56	cryptochrome-interacting basic-helix-loop-helix 5