PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003346
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 400aa    MW: 44985.8 Da    PI: 4.3278
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333949PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-15351PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l ++++ +G   W++ +++ g++R +k+c++rw++yl
        Pgl003346 15 RGAWTAEEDTRLSEYIQSHGESGWRSLPKKAGLNRRGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding521.6e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
        Pgl003346  68 RGNISPDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5291062IPR017930Myb domain
SuperFamilySSF466892.53E-2713109IPR009057Homeodomain-like
SMARTSM007174.0E-111464IPR001005SANT/Myb domain
PfamPF002497.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-211669IPR009057Homeodomain-like
CDDcd001674.84E-81762No hitNo description
PROSITE profilePS5129426.45563117IPR017930Myb domain
SMARTSM007172.6E-1667115IPR001005SANT/Myb domain
PfamPF002498.3E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2570117IPR009057Homeodomain-like
CDDcd001672.45E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRTPCCSKR EELNRGAWTA EEDTRLSEYI QSHGESGWRS LPKKAGLNRR GKSCRLRWLN  60
YLRPDIKRGN ISPDEEELII RMHRLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKLTMS  120
SQNPKFPMQA PADPEQSASS DSSEDDVVRS AEYGVINHSG IRSPPAKIGG TSISARVPPP  180
VASDEVVIMK SWKQLLEDSL MNELDDSEDN SSLMGIELSN DMLESEAPLM EIQNNVSCSA  240
SDPNESVYSH GHLVADATSN QRTSESNVLY SQDCNVLSLP PTDHTLDFRI QDFSLESLLQ  300
PSVYNLEEIC PVQSQINGSD HVSCFALAAE QSMTDIYNNT LEPDWLTPVD YEIQSSQPDQ  360
MDVLGNFFLS DENWQEEVPT SLSKIQEEEY RDILVDISNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.167480.0vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLG10.0B8LLG1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-60myb domain protein 7