PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003391
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 397aa    MW: 45365.5 Da    PI: 5.4257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347234PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-11978PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001387109323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   Cgk+F++   L++H  +H
  Pgl003391  87 CSyeGCGKTFTDAGALRKHSHVH 109
                77779**************8776 PP
2zf-C2H212.90.00034114138123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cg+ F ++s LkrH   H
  Pgl003391 114 HVCHyeGCGRKFLDSSKLKRHFLIH 138
                79*******************8877 PP
3zf-C2H221.94.7e-07144168123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   Cgk Fs   nL+ H+rtH
  Pgl003391 144 FTCPheGCGKAFSLDFNLRAHMRTH 168
                89**********************9 PP
4zf-C2H216.91.8e-05174199123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                + Cp   Cgk++ + + Lk Hi++ H
  Pgl003391 174 HICPfeECGKRYAHEYKLKAHIKStH 199
                689********************988 PP
5zf-C2H212.10.00059236261123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                + Cp   C+k++ + + L+ H+r+ H
  Pgl003391 236 FACPydSCDKCYIHEYKLNLHLRReH 261
                78*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-1382111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-785138No hitNo description
PROSITE profilePS5015711.55285114IPR007087Zinc finger, C2H2
SMARTSM003550.00185109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-12112134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.902114143IPR007087Zinc finger, C2H2
SMARTSM003550.027114138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-14125177No hitNo description
Gene3DG3DSA:3.30.160.601.7E-19135169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.09144173IPR007087Zinc finger, C2H2
SMARTSM003552.5E-4144168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-8170200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.785174204IPR007087Zinc finger, C2H2
SMARTSM003550.026174199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-6233259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349236263IPR007087Zinc finger, C2H2
SMARTSM003550.19236261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEALEKQHPY PNPQEHEQEQ AGQNKPQSTK AAGVKWIKEW VPQETVLNNG KCYFLKWVTE  60
DTLKALREKQ QEKEPEPESL PPRVFLCSYE GCGKTFTDAG ALRKHSHVHG EKQHVCHYEG  120
CGRKFLDSSK LKRHFLIHTG EKHFTCPHEG CGKAFSLDFN LRAHMRTHSQ ENYHICPFEE  180
CGKRYAHEYK LKAHIKSTHE KNLANAVKLP PQNEREFLHP KVPTSVYGSV PSDRPFACPY  240
DSCDKCYIHE YKLNLHLRRE HAGYAFEENG RHGSDSEDEM DQGSDQDGNG RNAGIMTGSG  300
RGRLRVTSKT SSATNLHRKF MNAAAVDSNT KQVPEQLWNQ KSLGKGHPRE DSEETEDQED  360
TDNEGWGHGT ETDDDDEDDN DDDDDDADEE ETEDDMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-37802011119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.216860.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629428.11e-139uncharacterized zinc finger protein At4g06634 isoform X4
SwissprotQ2V3L31e-106YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1U7Z1V61e-134A0A1U7Z1V6_NELNU; uncharacterized zinc finger protein At4g06634
STRINGXP_010246046.11e-135(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]